Update ci.yml

.github/CONTRIBUTING.md

@@ -70,3 +70,15 @@ $ rust-code-analysis-cli -p src/algorithm/neighbour/fastpair.rs --ls 22 --le 213
 * **PRs on develop**: any change should be PRed first in `development`
 
 * **testing**:  everything should work and be tested as defined in the workflow. If any is failing for non-related reasons, annotate the test failure in the PR comment.
+
+
+## Suggestions for debugging
+1. Install `lldb` for your platform
+2. Run `rust-lldb target/debug/libsmartcore.rlib` in your command-line
+3. In lldb, set up some breakpoints using `b func_name` or `b src/path/to/file.rs:linenumber`
+4. In lldb, run a single test with `r the_name_of_your_test`
+
+Display variables in scope: `frame variable <name>` 
+
+Execute expression: `p <expr>`
+

.github/workflows/ci.yml

@@ -23,6 +23,7 @@ jobs:
           ]
     env:
       TZ: "/usr/share/zoneinfo/your/location"
+      RUST_BACKTRACE: "1"
     steps:
       - uses: actions/checkout@v3
       - name: Cache .cargo and target

src/ensemble/random_forest_classifier.rs

@@ -55,7 +55,9 @@ use serde::{Deserialize, Serialize};
 
 use crate::api::{Predictor, SupervisedEstimator};
 use crate::error::{Failed, FailedError};
+use crate::linalg::basic::arrays::MutArray;
 use crate::linalg::basic::arrays::{Array1, Array2};
+use crate::linalg::basic::matrix::DenseMatrix;
 use crate::numbers::basenum::Number;
 use crate::numbers::floatnum::FloatNumber;
 
@@ -602,11 +604,76 @@ impl<TX: FloatNumber + PartialOrd, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY
         }
         samples
     }
+
+    /// Predict class probabilities for X.
+    ///
+    /// The predicted class probabilities of an input sample are computed as
+    /// the mean predicted class probabilities of the trees in the forest.
+    /// The class probability of a single tree is the fraction of samples of
+    /// the same class in a leaf.
+    ///
+    /// # Arguments
+    ///
+    /// * `x` - The input samples. A matrix of shape (n_samples, n_features).
+    ///
+    /// # Returns
+    ///
+    /// * `Result<DenseMatrix<f64>, Failed>` - The class probabilities of the input samples.
+    ///   The order of the classes corresponds to that in the attribute `classes_`.
+    ///   The matrix has shape (n_samples, n_classes).
+    ///
+    /// # Errors
+    ///
+    /// Returns a `Failed` error if:
+    /// * The model has not been fitted yet.
+    /// * The input `x` is not compatible with the model's expected input.
+    /// * Any of the tree predictions fail.
+    ///
+    /// # Examples
+    ///
+    /// ```
+    /// use smartcore::ensemble::random_forest_classifier::RandomForestClassifier;
+    /// use smartcore::linalg::basic::matrix::DenseMatrix;
+    /// use smartcore::linalg::basic::arrays::Array;
+    ///
+    /// let x = DenseMatrix::from_2d_array(&[
+    ///     &[5.1, 3.5, 1.4, 0.2],
+    ///     &[4.9, 3.0, 1.4, 0.2],
+    ///     &[7.0, 3.2, 4.7, 1.4],
+    /// ]).unwrap();
+    /// let y = vec![0, 0, 1];
+    ///
+    /// let forest = RandomForestClassifier::fit(&x, &y, Default::default()).unwrap();
+    /// let probas = forest.predict_proba(&x).unwrap();
+    ///
+    /// assert_eq!(probas.shape(), (3, 2));
+    /// ```
+    pub fn predict_proba(&self, x: &X) -> Result<DenseMatrix<f64>, Failed> {
+        let (n_samples, _) = x.shape();
+        let n_classes = self.classes.as_ref().unwrap().len();
+        let mut probas = DenseMatrix::<f64>::zeros(n_samples, n_classes);
+
+        for tree in self.trees.as_ref().unwrap().iter() {
+            let tree_predictions: Y = tree.predict(x).unwrap();
+
+            for (i, &class_idx) in tree_predictions.iterator(0).enumerate() {
+                let class_ = class_idx.to_usize().unwrap();
+                probas.add_element_mut((i, class_), 1.0);
+            }
+        }
+
+        let n_trees: f64 = self.trees.as_ref().unwrap().len() as f64;
+        probas.mul_scalar_mut(1.0 / n_trees);
+
+        Ok(probas)
+    }
 }
 
 #[cfg(test)]
 mod tests {
     use super::*;
+    use crate::ensemble::random_forest_classifier::RandomForestClassifier;
+    use crate::linalg::basic::arrays::Array;
     use crate::linalg::basic::matrix::DenseMatrix;
     use crate::metrics::*;
 
@@ -760,6 +827,101 @@ mod tests {
         );
     }
 
+    #[cfg_attr(
+        all(target_arch = "wasm32", not(target_os = "wasi")),
+        wasm_bindgen_test::wasm_bindgen_test
+    )]
+    #[test]
+    fn test_random_forest_predict_proba() {
+        use num_traits::FromPrimitive;
+        // Iris-like dataset (subset)
+        let x: DenseMatrix<f64> = DenseMatrix::from_2d_array(&[
+            &[5.1, 3.5, 1.4, 0.2],
+            &[4.9, 3.0, 1.4, 0.2],
+            &[4.7, 3.2, 1.3, 0.2],
+            &[4.6, 3.1, 1.5, 0.2],
+            &[5.0, 3.6, 1.4, 0.2],
+            &[7.0, 3.2, 4.7, 1.4],
+            &[6.4, 3.2, 4.5, 1.5],
+            &[6.9, 3.1, 4.9, 1.5],
+            &[5.5, 2.3, 4.0, 1.3],
+            &[6.5, 2.8, 4.6, 1.5],
+        ])
+        .unwrap();
+        let y: Vec<u32> = vec![0, 0, 0, 0, 0, 1, 1, 1, 1, 1];
+
+        let forest = RandomForestClassifier::fit(&x, &y, Default::default()).unwrap();
+        let probas = forest.predict_proba(&x).unwrap();
+
+        // Test shape
+        assert_eq!(probas.shape(), (10, 2));
+
+        let (pro_n_rows, _) = probas.shape();
+
+        // Test probability sum
+        for i in 0..pro_n_rows {
+            let row_sum: f64 = probas.get_row(i).sum();
+            assert!(
+                (row_sum - 1.0).abs() < 1e-6,
+                "Row probabilities should sum to 1"
+            );
+        }
+
+        // Test class prediction
+        let predictions: Vec<u32> = (0..pro_n_rows)
+            .map(|i| {
+                if probas.get((i, 0)) > probas.get((i, 1)) {
+                    0
+                } else {
+                    1
+                }
+            })
+            .collect();
+        let acc = accuracy(&y, &predictions);
+        assert!(acc > 0.8, "Accuracy should be high for the training set");
+
+        // Test probability values
+        // These values are approximate and based on typical random forest behavior
+        for i in 0..(pro_n_rows / 2) {
+            assert!(
+                f64::from_f32(0.6).unwrap().lt(probas.get((i, 0))),
+                "Class 0 samples should have high probability for class 0"
+            );
+            assert!(
+                f64::from_f32(0.4).unwrap().gt(probas.get((i, 1))),
+                "Class 0 samples should have low probability for class 1"
+            );
+        }
+
+        for i in (pro_n_rows / 2)..pro_n_rows {
+            assert!(
+                f64::from_f32(0.6).unwrap().lt(probas.get((i, 1))),
+                "Class 1 samples should have high probability for class 1"
+            );
+            assert!(
+                f64::from_f32(0.4).unwrap().gt(probas.get((i, 0))),
+                "Class 1 samples should have low probability for class 0"
+            );
+        }
+
+        // Test with new data
+        let x_new = DenseMatrix::from_2d_array(&[
+            &[5.0, 3.4, 1.5, 0.2], // Should be close to class 0
+            &[6.3, 3.3, 4.7, 1.6], // Should be close to class 1
+        ])
+        .unwrap();
+        let probas_new = forest.predict_proba(&x_new).unwrap();
+        assert_eq!(probas_new.shape(), (2, 2));
+        assert!(
+            probas_new.get((0, 0)) > probas_new.get((0, 1)),
+            "First sample should be predicted as class 0"
+        );
+        assert!(
+            probas_new.get((1, 1)) > probas_new.get((1, 0)),
+            "Second sample should be predicted as class 1"
+        );
+    }
+
     #[cfg_attr(
         all(target_arch = "wasm32", not(target_os = "wasi")),
         wasm_bindgen_test::wasm_bindgen_test