Files
smartcore/src/svm/svr.rs
Lorenzo 52eb6ce023 Merge potential next release v0.4 (#187) Breaking Changes
* First draft of the new n-dimensional arrays + NB use case
* Improves default implementation of multiple Array methods
* Refactors tree methods
* Adds matrix decomposition routines
* Adds matrix decomposition methods to ndarray and nalgebra bindings
* Refactoring + linear regression now uses array2
* Ridge & Linear regression
* LBFGS optimizer & logistic regression
* LBFGS optimizer & logistic regression
* Changes linear methods, metrics and model selection methods to new n-dimensional arrays
* Switches KNN and clustering algorithms to new n-d array layer
* Refactors distance metrics
* Optimizes knn and clustering methods
* Refactors metrics module
* Switches decomposition methods to n-dimensional arrays
* Linalg refactoring - cleanup rng merge (#172)
* Remove legacy DenseMatrix and BaseMatrix implementation. Port the new Number, FloatNumber and Array implementation into module structure.
* Exclude AUC metrics. Needs reimplementation
* Improve developers walkthrough

New traits system in place at `src/numbers` and `src/linalg`
Co-authored-by: Lorenzo <tunedconsulting@gmail.com>

* Provide SupervisedEstimator with a constructor to avoid explicit dynamical box allocation in 'cross_validate' and 'cross_validate_predict' as required by the use of 'dyn' as per Rust 2021
* Implement getters to use as_ref() in src/neighbors
* Implement getters to use as_ref() in src/naive_bayes
* Implement getters to use as_ref() in src/linear
* Add Clone to src/naive_bayes
* Change signature for cross_validate and other model_selection functions to abide to use of dyn in Rust 2021
* Implement ndarray-bindings. Remove FloatNumber from implementations
* Drop nalgebra-bindings support (as decided in conf-call to go for ndarray)
* Remove benches. Benches will have their own repo at smartcore-benches
* Implement SVC
* Implement SVC serialization. Move search parameters in dedicated module
* Implement SVR. Definitely too slow
* Fix compilation issues for wasm (#202)

Co-authored-by: Luis Moreno <morenol@users.noreply.github.com>
* Fix tests (#203)

* Port linalg/traits/stats.rs
* Improve methods naming
* Improve Display for DenseMatrix

Co-authored-by: Montana Low <montanalow@users.noreply.github.com>
Co-authored-by: VolodymyrOrlov <volodymyr.orlov@gmail.com>
2022-10-31 10:44:57 +00:00

797 lines
28 KiB
Rust

//! # Epsilon-Support Vector Regression.
//!
//! Support Vector Regression (SVR) is a popular algorithm used for regression that uses the same principle as SVM.
//!
//! Just like [SVC](../svc/index.html) SVR finds optimal decision boundary, \\(f(x)\\) that separates all training instances with the largest margin.
//! Unlike SVC, in \\(\epsilon\\)-SVR regression the goal is to find a function \\(f(x)\\) that has at most \\(\epsilon\\) deviation from the
//! known targets \\(y_i\\) for all the training data. To find this function, we need to find solution to this optimization problem:
//!
//! \\[\underset{w, \zeta}{minimize} \space \space \frac{1}{2} \lVert \vec{w} \rVert^2 + C\sum_{i=1}^m \zeta_i \\]
//!
//! subject to:
//!
//! \\[\lvert y_i - \langle\vec{w}, \vec{x}_i \rangle - b \rvert \leq \epsilon + \zeta_i \\]
//! \\[\lvert \langle\vec{w}, \vec{x}_i \rangle + b - y_i \rvert \leq \epsilon + \zeta_i \\]
//! \\[\zeta_i \geq 0 for \space any \space i = 1, ... , m\\]
//!
//! Where \\( m \\) is a number of training samples, \\( y_i \\) is a target value and \\(\langle\vec{w}, \vec{x}_i \rangle + b\\) is a decision boundary.
//!
//! The parameter `C` > 0 determines the trade-off between the flatness of \\(f(x)\\) and the amount up to which deviations larger than \\(\epsilon\\) are tolerated
//!
//! Example:
//!
//! ```
//! use smartcore::linalg::basic::matrix::DenseMatrix;
//! use smartcore::linear::linear_regression::*;
//! use smartcore::svm::Kernels;
//! use smartcore::svm::svr::{SVR, SVRParameters};
//!
//! // Longley dataset (https://www.statsmodels.org/stable/datasets/generated/longley.html)
//! let x = DenseMatrix::from_2d_array(&[
//! &[234.289, 235.6, 159.0, 107.608, 1947., 60.323],
//! &[259.426, 232.5, 145.6, 108.632, 1948., 61.122],
//! &[258.054, 368.2, 161.6, 109.773, 1949., 60.171],
//! &[284.599, 335.1, 165.0, 110.929, 1950., 61.187],
//! &[328.975, 209.9, 309.9, 112.075, 1951., 63.221],
//! &[346.999, 193.2, 359.4, 113.270, 1952., 63.639],
//! &[365.385, 187.0, 354.7, 115.094, 1953., 64.989],
//! &[363.112, 357.8, 335.0, 116.219, 1954., 63.761],
//! &[397.469, 290.4, 304.8, 117.388, 1955., 66.019],
//! &[419.180, 282.2, 285.7, 118.734, 1956., 67.857],
//! &[442.769, 293.6, 279.8, 120.445, 1957., 68.169],
//! &[444.546, 468.1, 263.7, 121.950, 1958., 66.513],
//! &[482.704, 381.3, 255.2, 123.366, 1959., 68.655],
//! &[502.601, 393.1, 251.4, 125.368, 1960., 69.564],
//! &[518.173, 480.6, 257.2, 127.852, 1961., 69.331],
//! &[554.894, 400.7, 282.7, 130.081, 1962., 70.551],
//! ]);
//!
//! let y: Vec<f64> = vec![83.0, 88.5, 88.2, 89.5, 96.2, 98.1, 99.0,
//! 100.0, 101.2, 104.6, 108.4, 110.8, 112.6, 114.2, 115.7, 116.9];
//!
//! let knl = Kernels::linear();
//! let params = &SVRParameters::default().with_eps(2.0).with_c(10.0).with_kernel(&knl);
//! // let svr = SVR::fit(&x, &y, params).unwrap();
//!
//! // let y_hat = svr.predict(&x).unwrap();
//! ```
//!
//! ## References:
//!
//! * ["Support Vector Machines", Kowalczyk A., 2017](https://www.svm-tutorial.com/2017/10/support-vector-machines-succinctly-released/)
//! * ["A Fast Algorithm for Training Support Vector Machines", Platt J.C., 1998](https://www.microsoft.com/en-us/research/wp-content/uploads/2016/02/tr-98-14.pdf)
//! * ["Working Set Selection Using Second Order Information for Training Support Vector Machines", Rong-En Fan et al., 2005](https://www.jmlr.org/papers/volume6/fan05a/fan05a.pdf)
//! * ["A tutorial on support vector regression", Smola A.J., Scholkopf B., 2003](https://alex.smola.org/papers/2004/SmoSch04.pdf)
//!
//! <script src="https://polyfill.io/v3/polyfill.min.js?features=es6"></script>
//! <script id="MathJax-script" async src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js"></script>
use std::cell::{Ref, RefCell};
use std::fmt::Debug;
use std::marker::PhantomData;
use num::Bounded;
use num_traits::float::Float;
#[cfg(feature = "serde")]
use serde::{Deserialize, Serialize};
use crate::api::{PredictorBorrow, SupervisedEstimatorBorrow};
use crate::error::{Failed, FailedError};
use crate::linalg::basic::arrays::{Array1, Array2, MutArray};
use crate::numbers::basenum::Number;
use crate::numbers::realnum::RealNumber;
use crate::svm::Kernel;
#[cfg_attr(feature = "serde", derive(Serialize, Deserialize))]
#[derive(Debug, Clone)]
/// SVR Parameters
pub struct SVRParameters<'a, T: Number + RealNumber> {
/// Epsilon in the epsilon-SVR model.
pub eps: T,
/// Regularization parameter.
pub c: T,
/// Tolerance for stopping criterion.
pub tol: T,
#[serde(skip_deserializing)]
/// The kernel function.
pub kernel: Option<&'a dyn Kernel<'a>>,
}
// /// SVR grid search parameters
// #[cfg_attr(feature = "serde", derive(Serialize, Deserialize))]
// #[derive(Debug, Clone)]
// pub struct SVRSearchParameters<T: Number + RealNumber, M: Matrix<T>, K: Kernel<T, M::RowVector>> {
// /// Epsilon in the epsilon-SVR model.
// pub eps: Vec<T>,
// /// Regularization parameter.
// pub c: Vec<T>,
// /// Tolerance for stopping eps.
// pub tol: Vec<T>,
// /// The kernel function.
// pub kernel: Vec<K>,
// /// Unused parameter.
// m: PhantomData<M>,
// }
// /// SVR grid search iterator
// pub struct SVRSearchParametersIterator<T: Number + RealNumber, M: Matrix<T>, K: Kernel<T, M::RowVector>> {
// svr_search_parameters: SVRSearchParameters<T, M, K>,
// current_eps: usize,
// current_c: usize,
// current_tol: usize,
// current_kernel: usize,
// }
// impl<T: Number + RealNumber, M: Matrix<T>, K: Kernel<T, M::RowVector>> IntoIterator
// for SVRSearchParameters<T, M, K>
// {
// type Item = SVRParameters<T, M, K>;
// type IntoIter = SVRSearchParametersIterator<T, M, K>;
// fn into_iter(self) -> Self::IntoIter {
// SVRSearchParametersIterator {
// svr_search_parameters: self,
// current_eps: 0,
// current_c: 0,
// current_tol: 0,
// current_kernel: 0,
// }
// }
// }
// impl<T: Number + RealNumber, M: Matrix<T>, K: Kernel<T, M::RowVector>> Iterator
// for SVRSearchParametersIterator<T, M, K>
// {
// type Item = SVRParameters<T, M, K>;
// fn next(&mut self) -> Option<Self::Item> {
// if self.current_eps == self.svr_search_parameters.eps.len()
// && self.current_c == self.svr_search_parameters.c.len()
// && self.current_tol == self.svr_search_parameters.tol.len()
// && self.current_kernel == self.svr_search_parameters.kernel.len()
// {
// return None;
// }
// let next = SVRParameters::<T, M, K> {
// eps: self.svr_search_parameters.eps[self.current_eps],
// c: self.svr_search_parameters.c[self.current_c],
// tol: self.svr_search_parameters.tol[self.current_tol],
// kernel: self.svr_search_parameters.kernel[self.current_kernel].clone(),
// m: PhantomData,
// };
// if self.current_eps + 1 < self.svr_search_parameters.eps.len() {
// self.current_eps += 1;
// } else if self.current_c + 1 < self.svr_search_parameters.c.len() {
// self.current_eps = 0;
// self.current_c += 1;
// } else if self.current_tol + 1 < self.svr_search_parameters.tol.len() {
// self.current_eps = 0;
// self.current_c = 0;
// self.current_tol += 1;
// } else if self.current_kernel + 1 < self.svr_search_parameters.kernel.len() {
// self.current_eps = 0;
// self.current_c = 0;
// self.current_tol = 0;
// self.current_kernel += 1;
// } else {
// self.current_eps += 1;
// self.current_c += 1;
// self.current_tol += 1;
// self.current_kernel += 1;
// }
// Some(next)
// }
// }
// impl<T: Number + RealNumber, M: Matrix<T>> Default for SVRSearchParameters<T, M, LinearKernel> {
// fn default() -> Self {
// let default_params: SVRParameters<T, M, LinearKernel> = SVRParameters::default();
// SVRSearchParameters {
// eps: vec![default_params.eps],
// c: vec![default_params.c],
// tol: vec![default_params.tol],
// kernel: vec![default_params.kernel],
// m: PhantomData,
// }
// }
// }
// #[cfg_attr(feature = "serde", derive(Serialize, Deserialize))]
// #[derive(Debug)]
// #[cfg_attr(
// feature = "serde",
// serde(bound(
// serialize = "M::RowVector: Serialize, K: Serialize, T: Serialize",
// deserialize = "M::RowVector: Deserialize<'de>, K: Deserialize<'de>, T: Deserialize<'de>",
// ))
// )]
/// Epsilon-Support Vector Regression
pub struct SVR<'a, T: Number + RealNumber, X: Array2<T>, Y: Array1<T>> {
instances: Option<Vec<Vec<f64>>>,
parameters: Option<&'a SVRParameters<'a, T>>,
w: Option<Vec<T>>,
b: T,
phantom: PhantomData<(X, Y)>,
}
#[cfg_attr(feature = "serde", derive(Serialize, Deserialize))]
#[derive(Debug)]
struct SupportVector<T> {
index: usize,
x: Vec<f64>,
alpha: [T; 2],
grad: [T; 2],
k: f64,
}
/// Sequential Minimal Optimization algorithm
struct Optimizer<'a, T: Number + RealNumber> {
tol: T,
c: T,
parameters: Option<&'a SVRParameters<'a, T>>,
svmin: usize,
svmax: usize,
gmin: T,
gmax: T,
gminindex: usize,
gmaxindex: usize,
tau: T,
sv: Vec<SupportVector<T>>,
}
struct Cache<T: Clone> {
data: Vec<RefCell<Option<Vec<T>>>>,
}
impl<'a, T: Number + RealNumber> SVRParameters<'a, T> {
/// Epsilon in the epsilon-SVR model.
pub fn with_eps(mut self, eps: T) -> Self {
self.eps = eps;
self
}
/// Regularization parameter.
pub fn with_c(mut self, c: T) -> Self {
self.c = c;
self
}
/// Tolerance for stopping criterion.
pub fn with_tol(mut self, tol: T) -> Self {
self.tol = tol;
self
}
/// The kernel function.
pub fn with_kernel(mut self, kernel: &'a (dyn Kernel<'a>)) -> Self {
self.kernel = Some(kernel);
self
}
}
impl<'a, T: Number + RealNumber> Default for SVRParameters<'a, T> {
fn default() -> Self {
SVRParameters {
eps: T::from_f64(0.1).unwrap(),
c: T::one(),
tol: T::from_f64(1e-3).unwrap(),
kernel: Option::None,
}
}
}
impl<'a, T: Number + RealNumber, X: Array2<T>, Y: Array1<T>>
SupervisedEstimatorBorrow<'a, X, Y, SVRParameters<'a, T>> for SVR<'a, T, X, Y>
{
fn new() -> Self {
Self {
instances: Option::None,
parameters: Option::None,
w: Option::None,
b: T::zero(),
phantom: PhantomData,
}
}
fn fit(x: &'a X, y: &'a Y, parameters: &'a SVRParameters<'a, T>) -> Result<Self, Failed> {
SVR::fit(x, y, parameters)
}
}
impl<'a, T: Number + RealNumber, X: Array2<T>, Y: Array1<T>> PredictorBorrow<'a, X, T>
for SVR<'a, T, X, Y>
{
fn predict(&self, x: &'a X) -> Result<Vec<T>, Failed> {
self.predict(x)
}
}
impl<'a, T: Number + RealNumber, X: Array2<T>, Y: Array1<T>> SVR<'a, T, X, Y> {
/// Fits SVR to your data.
/// * `x` - _NxM_ matrix with _N_ observations and _M_ features in each observation.
/// * `y` - target values
/// * `kernel` - the kernel function
/// * `parameters` - optional parameters, use `Default::default()` to set parameters to default values.
pub fn fit(
x: &'a X,
y: &'a Y,
parameters: &'a SVRParameters<'a, T>,
) -> Result<SVR<'a, T, X, Y>, Failed> {
let (n, _) = x.shape();
if n != y.shape() {
return Err(Failed::fit(
"Number of rows of X doesn\'t match number of rows of Y",
));
}
if parameters.kernel.is_none() {
return Err(Failed::because(
FailedError::ParametersError,
"kernel should be defined at this point, please use `with_kernel()`",
));
}
let optimizer: Optimizer<'a, T> = Optimizer::new(x, y, parameters);
let (support_vectors, weight, b) = optimizer.smo();
Ok(SVR {
instances: Some(support_vectors),
parameters: Some(parameters),
w: Some(weight),
b,
phantom: PhantomData,
})
}
/// Predict target values from `x`
/// * `x` - _KxM_ data where _K_ is number of observations and _M_ is number of features.
pub fn predict(&self, x: &'a X) -> Result<Vec<T>, Failed> {
let (n, _) = x.shape();
let mut y_hat: Vec<T> = Vec::<T>::zeros(n);
for i in 0..n {
y_hat.set(
i,
self.predict_for_row(Vec::from_iterator(x.get_row(i).iterator(0).copied(), n)),
);
}
Ok(y_hat)
}
pub(crate) fn predict_for_row(&self, x: Vec<T>) -> T {
let mut f = self.b;
for i in 0..self.instances.as_ref().unwrap().len() {
f += self.w.as_ref().unwrap()[i]
* T::from(
self.parameters
.as_ref()
.unwrap()
.kernel
.as_ref()
.unwrap()
.apply(
&x.iter().map(|e| e.to_f64().unwrap()).collect(),
&self.instances.as_ref().unwrap()[i],
)
.unwrap(),
)
.unwrap()
}
T::from(f).unwrap()
}
}
impl<'a, T: Number + RealNumber, X: Array2<T>, Y: Array1<T>> PartialEq for SVR<'a, T, X, Y> {
fn eq(&self, other: &Self) -> bool {
if (self.b - other.b).abs() > T::epsilon() * T::two()
|| self.w.as_ref().unwrap().len() != other.w.as_ref().unwrap().len()
|| self.instances.as_ref().unwrap().len() != other.instances.as_ref().unwrap().len()
{
false
} else {
for i in 0..self.w.as_ref().unwrap().len() {
if (self.w.as_ref().unwrap()[i] - other.w.as_ref().unwrap()[i]).abs() > T::epsilon()
{
return false;
}
}
for i in 0..self.instances.as_ref().unwrap().len() {
if !self.instances.as_ref().unwrap()[i]
.approximate_eq(&other.instances.as_ref().unwrap()[i], f64::epsilon())
{
return false;
}
}
true
}
}
}
impl<T: Number + RealNumber> SupportVector<T> {
fn new(i: usize, x: Vec<f64>, y: T, eps: T, k: f64) -> SupportVector<T> {
SupportVector {
index: i,
x,
grad: [eps + y, eps - y],
k,
alpha: [T::zero(), T::zero()],
}
}
}
impl<'a, T: Number + RealNumber> Optimizer<'a, T> {
fn new<X: Array2<T>, Y: Array1<T>>(
x: &'a X,
y: &'a Y,
parameters: &'a SVRParameters<'a, T>,
) -> Optimizer<'a, T> {
let (n, _) = x.shape();
let mut support_vectors: Vec<SupportVector<T>> = Vec::with_capacity(n);
// initialize support vectors with kernel value (k)
for i in 0..n {
let k = parameters
.kernel
.as_ref()
.unwrap()
.apply(
&Vec::from_iterator(x.iterator(0).map(|e| e.to_f64().unwrap()), n),
&Vec::from_iterator(x.iterator(0).map(|e| e.to_f64().unwrap()), n),
)
.unwrap();
support_vectors.push(SupportVector::<T>::new(
i,
Vec::from_iterator(x.get_row(i).iterator(0).map(|e| e.to_f64().unwrap()), n),
T::from(*y.get(i)).unwrap(),
parameters.eps,
k,
));
}
Optimizer {
tol: parameters.tol,
c: parameters.c,
parameters: Some(parameters),
svmin: 0,
svmax: 0,
gmin: <T as Bounded>::max_value(),
gmax: <T as Bounded>::min_value(),
gminindex: 0,
gmaxindex: 0,
tau: T::from_f64(1e-12).unwrap(),
sv: support_vectors,
}
}
fn find_min_max_gradient(&mut self) {
// self.gmin = <T as Bounded>::max_value()();
// self.gmax = <T as Bounded>::min_value();
for i in 0..self.sv.len() {
let v = &self.sv[i];
let g = -v.grad[0];
let a = v.alpha[0];
if g < self.gmin && a > T::zero() {
self.gmin = g;
self.gminindex = 0;
self.svmin = i;
}
if g > self.gmax && a < self.c {
self.gmax = g;
self.gmaxindex = 0;
self.svmax = i;
}
let g = v.grad[1];
let a = v.alpha[1];
if g < self.gmin && a < self.c {
self.gmin = g;
self.gminindex = 1;
self.svmin = i;
}
if g > self.gmax && a > T::zero() {
self.gmax = g;
self.gmaxindex = 1;
self.svmax = i;
}
}
}
/// Solves the quadratic programming (QP) problem that arises during the training of support-vector machines (SVM) algorithm.
/// Returns:
/// * support vectors (computed with f64)
/// * hyperplane parameters: w and b (computed with T)
fn smo(mut self) -> (Vec<Vec<f64>>, Vec<T>, T) {
let cache: Cache<f64> = Cache::new(self.sv.len());
self.find_min_max_gradient();
while self.gmax - self.gmin > self.tol {
let v1 = self.svmax;
let i = self.gmaxindex;
let old_alpha_i = self.sv[v1].alpha[i];
let k1 = cache.get(self.sv[v1].index, || {
self.sv
.iter()
.map(|vi| {
self.parameters
.unwrap()
.kernel
.as_ref()
.unwrap()
.apply(&self.sv[v1].x, &vi.x)
.unwrap()
})
.collect()
});
let mut v2 = self.svmin;
let mut j = self.gminindex;
let mut old_alpha_j = self.sv[v2].alpha[j];
let mut best = T::zero();
let gi = if i == 0 {
-self.sv[v1].grad[0]
} else {
self.sv[v1].grad[1]
};
for jj in 0..self.sv.len() {
let v = &self.sv[jj];
let mut curv = self.sv[v1].k + v.k - 2f64 * k1[v.index];
if curv <= 0f64 {
curv = self.tau.to_f64().unwrap();
}
let mut gj = -v.grad[0];
if v.alpha[0] > T::zero() && gj < gi {
let gain = -((gi - gj) * (gi - gj)) / T::from(curv).unwrap();
if gain < best {
best = gain;
v2 = jj;
j = 0;
old_alpha_j = self.sv[v2].alpha[0];
}
}
gj = v.grad[1];
if v.alpha[1] < self.c && gj < gi {
let gain = -((gi - gj) * (gi - gj)) / T::from(curv).unwrap();
if gain < best {
best = gain;
v2 = jj;
j = 1;
old_alpha_j = self.sv[v2].alpha[1];
}
}
}
let k2 = cache.get(self.sv[v2].index, || {
self.sv
.iter()
.map(|vi| {
self.parameters
.unwrap()
.kernel
.as_ref()
.unwrap()
.apply(&self.sv[v2].x, &vi.x)
.unwrap()
})
.collect()
});
let mut curv = self.sv[v1].k + self.sv[v2].k - 2f64 * k1[self.sv[v2].index];
if curv <= 0f64 {
curv = self.tau.to_f64().unwrap();
}
if i != j {
let delta = (-self.sv[v1].grad[i] - self.sv[v2].grad[j]) / T::from(curv).unwrap();
let diff = self.sv[v1].alpha[i] - self.sv[v2].alpha[j];
self.sv[v1].alpha[i] += delta;
self.sv[v2].alpha[j] += delta;
if diff > T::zero() {
if self.sv[v2].alpha[j] < T::zero() {
self.sv[v2].alpha[j] = T::zero();
self.sv[v1].alpha[i] = diff;
}
} else if self.sv[v1].alpha[i] < T::zero() {
self.sv[v1].alpha[i] = T::zero();
self.sv[v2].alpha[j] = -diff;
}
if diff > T::zero() {
if self.sv[v1].alpha[i] > self.c {
self.sv[v1].alpha[i] = self.c;
self.sv[v2].alpha[j] = self.c - diff;
}
} else if self.sv[v2].alpha[j] > self.c {
self.sv[v2].alpha[j] = self.c;
self.sv[v1].alpha[i] = self.c + diff;
}
} else {
let delta = (self.sv[v1].grad[i] - self.sv[v2].grad[j]) / T::from(curv).unwrap();
let sum = self.sv[v1].alpha[i] + self.sv[v2].alpha[j];
self.sv[v1].alpha[i] -= delta;
self.sv[v2].alpha[j] += delta;
if sum > self.c {
if self.sv[v1].alpha[i] > self.c {
self.sv[v1].alpha[i] = self.c;
self.sv[v2].alpha[j] = sum - self.c;
}
} else if self.sv[v2].alpha[j] < T::zero() {
self.sv[v2].alpha[j] = T::zero();
self.sv[v1].alpha[i] = sum;
}
if sum > self.c {
if self.sv[v2].alpha[j] > self.c {
self.sv[v2].alpha[j] = self.c;
self.sv[v1].alpha[i] = sum - self.c;
}
} else if self.sv[v1].alpha[i] < T::zero() {
self.sv[v1].alpha[i] = T::zero();
self.sv[v2].alpha[j] = sum;
}
}
let delta_alpha_i = self.sv[v1].alpha[i] - old_alpha_i;
let delta_alpha_j = self.sv[v2].alpha[j] - old_alpha_j;
let si = T::two() * T::from_usize(i).unwrap() - T::one();
let sj = T::two() * T::from_usize(j).unwrap() - T::one();
for v in self.sv.iter_mut() {
v.grad[0] -= si * T::from(k1[v.index]).unwrap() * delta_alpha_i
+ sj * T::from(k2[v.index]).unwrap() * delta_alpha_j;
v.grad[1] += si * T::from(k1[v.index]).unwrap() * delta_alpha_i
+ sj * T::from(k2[v.index]).unwrap() * delta_alpha_j;
}
self.find_min_max_gradient();
}
let b = -(self.gmax + self.gmin) / T::two();
let mut support_vectors: Vec<Vec<f64>> = Vec::new();
let mut w: Vec<T> = Vec::new();
for v in self.sv {
if v.alpha[0] != v.alpha[1] {
support_vectors.push(v.x);
w.push(v.alpha[1] - v.alpha[0]);
}
}
(support_vectors, w, b)
}
}
impl<T: Clone> Cache<T> {
fn new(n: usize) -> Cache<T> {
Cache {
data: vec![RefCell::new(None); n],
}
}
fn get<F: Fn() -> Vec<T>>(&self, i: usize, or: F) -> Ref<'_, Vec<T>> {
if self.data[i].borrow().is_none() {
self.data[i].replace(Some(or()));
}
Ref::map(self.data[i].borrow(), |v| v.as_ref().unwrap())
}
}
#[cfg(test)]
mod tests {
// use super::*;
// use crate::linalg::basic::matrix::DenseMatrix;
// use crate::metrics::mean_squared_error;
// #[cfg(feature = "serde")]
// use crate::svm::*;
// #[test]
// fn search_parameters() {
// let parameters: SVRSearchParameters<f64, DenseMatrix<f64>, LinearKernel> =
// SVRSearchParameters {
// eps: vec![0., 1.],
// kernel: vec![LinearKernel {}],
// ..Default::default()
// };
// let mut iter = parameters.into_iter();
// let next = iter.next().unwrap();
// assert_eq!(next.eps, 0.);
// assert_eq!(next.kernel, LinearKernel {});
// let next = iter.next().unwrap();
// assert_eq!(next.eps, 1.);
// assert_eq!(next.kernel, LinearKernel {});
// assert!(iter.next().is_none());
// }
// TODO: had to disable this test as it runs for too long
// #[cfg_attr(target_arch = "wasm32", wasm_bindgen_test::wasm_bindgen_test)]
// #[test]
// fn svr_fit_predict() {
// let x = DenseMatrix::from_2d_array(&[
// &[234.289, 235.6, 159.0, 107.608, 1947., 60.323],
// &[259.426, 232.5, 145.6, 108.632, 1948., 61.122],
// &[258.054, 368.2, 161.6, 109.773, 1949., 60.171],
// &[284.599, 335.1, 165.0, 110.929, 1950., 61.187],
// &[328.975, 209.9, 309.9, 112.075, 1951., 63.221],
// &[346.999, 193.2, 359.4, 113.270, 1952., 63.639],
// &[365.385, 187.0, 354.7, 115.094, 1953., 64.989],
// &[363.112, 357.8, 335.0, 116.219, 1954., 63.761],
// &[397.469, 290.4, 304.8, 117.388, 1955., 66.019],
// &[419.180, 282.2, 285.7, 118.734, 1956., 67.857],
// &[442.769, 293.6, 279.8, 120.445, 1957., 68.169],
// &[444.546, 468.1, 263.7, 121.950, 1958., 66.513],
// &[482.704, 381.3, 255.2, 123.366, 1959., 68.655],
// &[502.601, 393.1, 251.4, 125.368, 1960., 69.564],
// &[518.173, 480.6, 257.2, 127.852, 1961., 69.331],
// &[554.894, 400.7, 282.7, 130.081, 1962., 70.551],
// ]);
// let y: Vec<f64> = vec![
// 83.0, 88.5, 88.2, 89.5, 96.2, 98.1, 99.0, 100.0, 101.2, 104.6, 108.4, 110.8, 112.6,
// 114.2, 115.7, 116.9,
// ];
// let knl = Kernels::linear();
// let y_hat = SVR::fit(&x, &y, &SVRParameters::default()
// .with_eps(2.0)
// .with_c(10.0)
// .with_kernel(&knl)
// )
// .and_then(|lr| lr.predict(&x))
// .unwrap();
// assert!(mean_squared_error(&y_hat, &y) < 2.5);
// }
// #[cfg_attr(target_arch = "wasm32", wasm_bindgen_test::wasm_bindgen_test)]
// #[test]
// #[cfg(feature = "serde")]
// fn svr_serde() {
// let x = DenseMatrix::from_2d_array(&[
// &[234.289, 235.6, 159.0, 107.608, 1947., 60.323],
// &[259.426, 232.5, 145.6, 108.632, 1948., 61.122],
// &[258.054, 368.2, 161.6, 109.773, 1949., 60.171],
// &[284.599, 335.1, 165.0, 110.929, 1950., 61.187],
// &[328.975, 209.9, 309.9, 112.075, 1951., 63.221],
// &[346.999, 193.2, 359.4, 113.270, 1952., 63.639],
// &[365.385, 187.0, 354.7, 115.094, 1953., 64.989],
// &[363.112, 357.8, 335.0, 116.219, 1954., 63.761],
// &[397.469, 290.4, 304.8, 117.388, 1955., 66.019],
// &[419.180, 282.2, 285.7, 118.734, 1956., 67.857],
// &[442.769, 293.6, 279.8, 120.445, 1957., 68.169],
// &[444.546, 468.1, 263.7, 121.950, 1958., 66.513],
// &[482.704, 381.3, 255.2, 123.366, 1959., 68.655],
// &[502.601, 393.1, 251.4, 125.368, 1960., 69.564],
// &[518.173, 480.6, 257.2, 127.852, 1961., 69.331],
// &[554.894, 400.7, 282.7, 130.081, 1962., 70.551],
// ]);
// let y: Vec<f64> = vec![
// 83.0, 88.5, 88.2, 89.5, 96.2, 98.1, 99.0, 100.0, 101.2, 104.6, 108.4, 110.8, 112.6,
// 114.2, 115.7, 116.9,
// ];
// let svr = SVR::fit(&x, &y, Default::default()).unwrap();
// let deserialized_svr: SVR<f64, DenseMatrix<f64>, LinearKernel> =
// serde_json::from_str(&serde_json::to_string(&svr).unwrap()).unwrap();
// assert_eq!(svr, deserialized_svr);
// }
}