19 Commits

Author SHA1 Message Date
Lorenzo (Mec-iS)
13bb222ca7 Merge branch 'development' into kmeans-with-fastpair 2023-05-04 17:19:01 +01:00
Lorenzo
2d7c055154 Bump version 2023-05-01 13:20:17 +01:00
Ruben De Smet
545ed6ce2b Remove some allocations (#262)
* Remove some allocations

* Remove some more allocations
2023-04-26 21:46:26 +08:00
morenol
8939ed93b9 chore: fix clippy warnings from Rust release 1.69 (#263)
* chore: fix clippy warnings from Rust release 1.69

* chore: run `cargo fmt`

* refactor: remove unused type parameter

---------

Co-authored-by: Luis Moreno <morenol@users.noreply.github.com>
2023-04-26 01:35:58 +09:00
Lorenzo
9cd7348403 Update CONTRIBUTING.md 2023-04-10 15:13:27 +01:00
Lorenzo (Mec-iS)
bf65fe3753 Merge branch 'march-2023-improvements' into kmeans-with-fastpair 2023-03-24 12:09:55 +09:00
Lorenzo (Mec-iS)
074cfaf14f rustfmt 2023-03-24 12:06:54 +09:00
Lorenzo
393cf15534 Merge branch 'development' into march-2023-improvements 2023-03-24 12:05:06 +09:00
Hsiang-Cheng Yang
d52830a818 Update arrays.rs (#253)
fix a typo
2023-03-23 19:15:54 -04:00
Lorenzo (Mec-iS)
80c406b37d Merge branch 'development' of github.com:smartcorelib/smartcore into march-2023-improvements 2023-03-21 17:38:35 +09:00
Lorenzo (Mec-iS)
50e040a7a2 Merge branch 'development' of github.com:smartcorelib/smartcore into kmeans-with-fastpair 2023-03-21 17:38:06 +09:00
Lorenzo (Mec-iS)
8765bd2173 Add fit_with_centroids 2023-03-21 17:37:58 +09:00
Lorenzo (Mec-iS)
0e1bf6ce7f Add ordered_pairs method to FastPair 2023-03-21 14:46:33 +09:00
Lorenzo
d15ea43975 Remove failure in case of failed upload to codecov.io 2023-03-20 15:08:30 +00:00
Lorenzo
f498f9629e Implement realnum::rand (#251)
Co-authored-by: Luis Moreno <morenol@users.noreply.github.com>
Co-authored-by: Lorenzo <tunedconsulting@gmail.com>

* Implement rand. Use the new derive [#default]
* Use custom range
* Use range seed
* Bump version
* Add array length checks for
2023-03-20 14:45:44 +00:00
Lorenzo
7d059c4fb1 Update README.md 2023-03-20 11:54:10 +00:00
morenol
c7353d0b57 Run cargo clippy --fix (#250)
* Run `cargo clippy --fix`
* Run `cargo clippy --all-features --fix`
* Fix other clippy warnings
* cargo fmt

Co-authored-by: Luis Moreno <morenol@users.noreply.github.com>
2023-01-27 10:41:18 +00:00
Lorenzo
83dcf9a8ac Delete iml file 2022-11-10 14:09:55 +00:00
Lorenzo (Mec-iS)
3126ee87d3 Pin deps version 2022-11-09 12:03:03 +00:00
58 changed files with 591 additions and 381 deletions
+2
View File
@@ -37,6 +37,8 @@ $ rust-code-analysis-cli -p src/algorithm/neighbour/fastpair.rs --ls 22 --le 213
``` ```
* find more information about what happens in your binary with [`twiggy`](https://rustwasm.github.io/twiggy/install.html). This need a compiled binary so create a brief `main {}` function using `smartcore` and then point `twiggy` to that file. * find more information about what happens in your binary with [`twiggy`](https://rustwasm.github.io/twiggy/install.html). This need a compiled binary so create a brief `main {}` function using `smartcore` and then point `twiggy` to that file.
* Please take a look to the output of a profiler to spot most evident performance problems, see [this guide about using a profiler](http://www.codeofview.com/fix-rs/2017/01/24/how-to-optimize-rust-programs-on-linux/).
## Issue Report Process ## Issue Report Process
1. Go to the project's issues. 1. Go to the project's issues.
+1 -1
View File
@@ -41,4 +41,4 @@ jobs:
- name: Upload to codecov.io - name: Upload to codecov.io
uses: codecov/codecov-action@v2 uses: codecov/codecov-action@v2
with: with:
fail_ci_if_error: true fail_ci_if_error: false
+3 -3
View File
@@ -2,7 +2,7 @@
name = "smartcore" name = "smartcore"
description = "Machine Learning in Rust." description = "Machine Learning in Rust."
homepage = "https://smartcorelib.org" homepage = "https://smartcorelib.org"
version = "0.3.0" version = "0.3.2"
authors = ["smartcore Developers"] authors = ["smartcore Developers"]
edition = "2021" edition = "2021"
license = "Apache-2.0" license = "Apache-2.0"
@@ -42,13 +42,13 @@ std_rand = ["rand/std_rng", "rand/std"]
js = ["getrandom/js"] js = ["getrandom/js"]
[target.'cfg(target_arch = "wasm32")'.dependencies] [target.'cfg(target_arch = "wasm32")'.dependencies]
getrandom = { version = "*", optional = true } getrandom = { version = "0.2.8", optional = true }
[target.'cfg(all(target_arch = "wasm32", not(target_os = "wasi")))'.dev-dependencies] [target.'cfg(all(target_arch = "wasm32", not(target_os = "wasi")))'.dev-dependencies]
wasm-bindgen-test = "0.3" wasm-bindgen-test = "0.3"
[dev-dependencies] [dev-dependencies]
itertools = "*" itertools = "0.10.5"
serde_json = "1.0" serde_json = "1.0"
bincode = "1.3.1" bincode = "1.3.1"
+1 -1
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@@ -18,4 +18,4 @@
----- -----
[![CI](https://github.com/smartcorelib/smartcore/actions/workflows/ci.yml/badge.svg)](https://github.com/smartcorelib/smartcore/actions/workflows/ci.yml) [![CI](https://github.com/smartcorelib/smartcore/actions/workflows/ci.yml/badge.svg)](https://github.com/smartcorelib/smartcore/actions/workflows/ci.yml)
To start getting familiar with the new smartcore v0.5 API, there is now available a [**Jupyter Notebook environment repository**](https://github.com/smartcorelib/smartcore-jupyter). Please see instructions there, contributions welcome see [CONTRIBUTING](.github/CONTRIBUTING.md). To start getting familiar with the new smartcore v0.3 API, there is now available a [**Jupyter Notebook environment repository**](https://github.com/smartcorelib/smartcore-jupyter). Please see instructions there, contributions welcome see [CONTRIBUTING](.github/CONTRIBUTING.md).
-15
View File
@@ -1,15 +0,0 @@
<?xml version="1.0" encoding="UTF-8"?>
<module type="RUST_MODULE" version="4">
<component name="NewModuleRootManager" inherit-compiler-output="true">
<exclude-output />
<content url="file://$MODULE_DIR$">
<sourceFolder url="file://$MODULE_DIR$/src" isTestSource="false" />
<sourceFolder url="file://$MODULE_DIR$/examples" isTestSource="false" />
<sourceFolder url="file://$MODULE_DIR$/tests" isTestSource="true" />
<sourceFolder url="file://$MODULE_DIR$/benches" isTestSource="true" />
<excludeFolder url="file://$MODULE_DIR$/target" />
</content>
<orderEntry type="inheritedJdk" />
<orderEntry type="sourceFolder" forTests="false" />
</component>
</module>
+59 -13
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@@ -179,6 +179,21 @@ impl<'a, T: RealNumber + FloatNumber, M: Array2<T>> FastPair<'a, T, M> {
} }
} }
///
/// Return order dissimilarities from closest to furthest
///
#[allow(dead_code)]
pub fn ordered_pairs(&self) -> std::vec::IntoIter<&PairwiseDistance<T>> {
// improvement: implement this to return `impl Iterator<Item = &PairwiseDistance<T>>`
// need to implement trait `Iterator` for `Vec<&PairwiseDistance<T>>`
let mut distances = self
.distances
.values()
.collect::<Vec<&PairwiseDistance<T>>>();
distances.sort_by(|a, b| a.partial_cmp(b).unwrap());
distances.into_iter()
}
// //
// Compute distances from input to all other points in data-structure. // Compute distances from input to all other points in data-structure.
// input is the row index of the sample matrix // input is the row index of the sample matrix
@@ -260,8 +275,8 @@ mod tests_fastpair {
let distances = fastpair.distances; let distances = fastpair.distances;
let neighbours = fastpair.neighbours; let neighbours = fastpair.neighbours;
assert!(distances.len() != 0); assert!(!distances.is_empty());
assert!(neighbours.len() != 0); assert!(!neighbours.is_empty());
assert_eq!(10, neighbours.len()); assert_eq!(10, neighbours.len());
assert_eq!(10, distances.len()); assert_eq!(10, distances.len());
@@ -276,17 +291,13 @@ mod tests_fastpair {
// We expect an error when we run `FastPair` on this dataset, // We expect an error when we run `FastPair` on this dataset,
// becuase `FastPair` currently only works on a minimum of 3 // becuase `FastPair` currently only works on a minimum of 3
// points. // points.
let _fastpair = FastPair::new(&dataset); let fastpair = FastPair::new(&dataset);
assert!(fastpair.is_err());
match _fastpair { if let Err(e) = fastpair {
Err(e) => { let expected_error =
let expected_error = Failed::because(FailedError::FindFailed, "min number of rows should be 3");
Failed::because(FailedError::FindFailed, "min number of rows should be 3"); assert_eq!(e, expected_error)
assert_eq!(e, expected_error)
}
_ => {
assert!(false);
}
} }
} }
@@ -582,7 +593,7 @@ mod tests_fastpair {
}; };
for p in dissimilarities.iter() { for p in dissimilarities.iter() {
if p.distance.unwrap() < min_dissimilarity.distance.unwrap() { if p.distance.unwrap() < min_dissimilarity.distance.unwrap() {
min_dissimilarity = p.clone() min_dissimilarity = *p
} }
} }
@@ -594,4 +605,39 @@ mod tests_fastpair {
assert_eq!(closest, min_dissimilarity); assert_eq!(closest, min_dissimilarity);
} }
#[test]
fn fastpair_ordered_pairs() {
let x = DenseMatrix::<f64>::from_2d_array(&[
&[5.1, 3.5, 1.4, 0.2],
&[4.9, 3.0, 1.4, 0.2],
&[4.7, 3.2, 1.3, 0.2],
&[4.6, 3.1, 1.5, 0.2],
&[5.0, 3.6, 1.4, 0.2],
&[5.4, 3.9, 1.7, 0.4],
&[4.9, 3.1, 1.5, 0.1],
&[7.0, 3.2, 4.7, 1.4],
&[6.4, 3.2, 4.5, 1.5],
&[6.9, 3.1, 4.9, 1.5],
&[5.5, 2.3, 4.0, 1.3],
&[6.5, 2.8, 4.6, 1.5],
&[4.6, 3.4, 1.4, 0.3],
&[5.0, 3.4, 1.5, 0.2],
&[4.4, 2.9, 1.4, 0.2],
]);
let fastpair = FastPair::new(&x).unwrap();
let ordered = fastpair.ordered_pairs();
let mut previous: f64 = -1.0;
for p in ordered {
if previous == -1.0 {
previous = p.distance.unwrap();
} else {
let current = p.distance.unwrap();
assert!(current >= previous);
previous = current;
}
}
}
} }
+2 -7
View File
@@ -49,20 +49,15 @@ pub mod linear_search;
/// Both, KNN classifier and regressor benefits from underlying search algorithms that helps to speed up queries. /// Both, KNN classifier and regressor benefits from underlying search algorithms that helps to speed up queries.
/// `KNNAlgorithmName` maintains a list of supported search algorithms, see [KNN algorithms](../algorithm/neighbour/index.html) /// `KNNAlgorithmName` maintains a list of supported search algorithms, see [KNN algorithms](../algorithm/neighbour/index.html)
#[cfg_attr(feature = "serde", derive(Serialize, Deserialize))] #[cfg_attr(feature = "serde", derive(Serialize, Deserialize))]
#[derive(Debug, Clone)] #[derive(Debug, Clone, Default)]
pub enum KNNAlgorithmName { pub enum KNNAlgorithmName {
/// Heap Search algorithm, see [`LinearSearch`](../algorithm/neighbour/linear_search/index.html) /// Heap Search algorithm, see [`LinearSearch`](../algorithm/neighbour/linear_search/index.html)
LinearSearch, LinearSearch,
/// Cover Tree Search algorithm, see [`CoverTree`](../algorithm/neighbour/cover_tree/index.html) /// Cover Tree Search algorithm, see [`CoverTree`](../algorithm/neighbour/cover_tree/index.html)
#[default]
CoverTree, CoverTree,
} }
impl Default for KNNAlgorithmName {
fn default() -> Self {
KNNAlgorithmName::CoverTree
}
}
#[cfg_attr(feature = "serde", derive(Serialize, Deserialize))] #[cfg_attr(feature = "serde", derive(Serialize, Deserialize))]
#[derive(Debug)] #[derive(Debug)]
pub(crate) enum KNNAlgorithm<T: Number, D: Distance<Vec<T>>> { pub(crate) enum KNNAlgorithm<T: Number, D: Distance<Vec<T>>> {
+2 -2
View File
@@ -18,7 +18,7 @@
//! //!
//! Example: //! Example:
//! //!
//! ``` //! ```ignore
//! use smartcore::linalg::basic::matrix::DenseMatrix; //! use smartcore::linalg::basic::matrix::DenseMatrix;
//! use smartcore::linalg::basic::arrays::Array2; //! use smartcore::linalg::basic::arrays::Array2;
//! use smartcore::cluster::dbscan::*; //! use smartcore::cluster::dbscan::*;
@@ -511,6 +511,6 @@ mod tests {
.and_then(|dbscan| dbscan.predict(&x)) .and_then(|dbscan| dbscan.predict(&x))
.unwrap(); .unwrap();
println!("{:?}", labels); println!("{labels:?}");
} }
} }
+179 -3
View File
@@ -62,7 +62,7 @@ use serde::{Deserialize, Serialize};
use crate::algorithm::neighbour::bbd_tree::BBDTree; use crate::algorithm::neighbour::bbd_tree::BBDTree;
use crate::api::{Predictor, UnsupervisedEstimator}; use crate::api::{Predictor, UnsupervisedEstimator};
use crate::error::Failed; use crate::error::Failed;
use crate::linalg::basic::arrays::{Array1, Array2}; use crate::linalg::basic::arrays::{Array1, Array2, Array};
use crate::metrics::distance::euclidian::*; use crate::metrics::distance::euclidian::*;
use crate::numbers::basenum::Number; use crate::numbers::basenum::Number;
use crate::rand_custom::get_rng_impl; use crate::rand_custom::get_rng_impl;
@@ -322,6 +322,109 @@ impl<TX: Number, TY: Number, X: Array2<TX>, Y: Array1<TY>> KMeans<TX, TY, X, Y>
}) })
} }
/// Fit algorithm to _NxM_ matrix where _N_ is number of samples and _M_ is number of features.
/// * `data` - training instances to cluster
/// * `parameters` - cluster parameters
/// * `centroids` - starting centroids
pub fn fit_with_centroids(
data: &X,
parameters: KMeansParameters,
centroids: Vec<Vec<f64>>,
) -> Result<KMeans<TX, TY, X, Y>, Failed> {
// TODO: reuse existing methods in `crate::metrics`
fn euclidean_distance(point1: &Vec<f64>, point2: &Vec<f64>) -> f64 {
let mut dist = 0.0;
for i in 0..point1.len() {
dist += (point1[i] - point2[i]).powi(2);
}
dist.sqrt()
}
fn closest_centroid(point: &Vec<f64>, centroids: &Vec<Vec<f64>>) -> usize {
let mut closest_idx = 0;
let mut closest_dist = std::f64::MAX;
for (i, centroid) in centroids.iter().enumerate() {
let dist = euclidean_distance(point, centroid);
if dist < closest_dist {
closest_dist = dist;
closest_idx = i;
}
}
closest_idx
}
let bbd = BBDTree::new(data);
if centroids.len() != parameters.k {
return Err(Failed::fit(&format!(
"number of centroids ({}) must be equal to k ({})",
centroids.len(),
parameters.k
)));
}
let mut y = vec![0; data.shape().0];
for i in 0..data.shape().0 {
y[i] = closest_centroid(
&Vec::from_iterator(data.get_row(i).iterator(0).map(|e| e.to_f64().unwrap()),
data.shape().1), &centroids
);
}
let mut size = vec![0; parameters.k];
let mut new_centroids = vec![vec![0f64; data.shape().1]; parameters.k];
for i in 0..data.shape().0 {
size[y[i]] += 1;
}
for i in 0..data.shape().0 {
for j in 0..data.shape().1 {
new_centroids[y[i]][j] += data.get((i, j)).to_f64().unwrap();
}
}
for i in 0..parameters.k {
for j in 0..data.shape().1 {
new_centroids[i][j] /= size[i] as f64;
}
}
let mut sums = vec![vec![0f64; data.shape().1]; parameters.k];
let mut distortion = std::f64::MAX;
for _ in 1..=parameters.max_iter {
let dist = bbd.clustering(&new_centroids, &mut sums, &mut size, &mut y);
for i in 0..parameters.k {
if size[i] > 0 {
for j in 0..data.shape().1 {
new_centroids[i][j] = sums[i][j] / size[i] as f64;
}
}
}
if distortion <= dist {
break;
} else {
distortion = dist;
}
}
Ok(KMeans {
k: parameters.k,
_y: y,
size,
_distortion: distortion,
centroids: new_centroids,
_phantom_tx: PhantomData,
_phantom_ty: PhantomData,
_phantom_x: PhantomData,
_phantom_y: PhantomData,
})
}
/// Predict clusters for `x` /// Predict clusters for `x`
/// * `x` - matrix with new data to transform of size _KxM_ , where _K_ is number of new samples and _M_ is number of features. /// * `x` - matrix with new data to transform of size _KxM_ , where _K_ is number of new samples and _M_ is number of features.
pub fn predict(&self, x: &X) -> Result<Y, Failed> { pub fn predict(&self, x: &X) -> Result<Y, Failed> {
@@ -417,6 +520,7 @@ impl<TX: Number, TY: Number, X: Array2<TX>, Y: Array1<TY>> KMeans<TX, TY, X, Y>
mod tests { mod tests {
use super::*; use super::*;
use crate::linalg::basic::matrix::DenseMatrix; use crate::linalg::basic::matrix::DenseMatrix;
use crate::algorithm::neighbour::fastpair;
#[cfg_attr( #[cfg_attr(
all(target_arch = "wasm32", not(target_os = "wasi")), all(target_arch = "wasm32", not(target_os = "wasi")),
@@ -498,8 +602,80 @@ mod tests {
let y: Vec<usize> = kmeans.predict(&x).unwrap(); let y: Vec<usize> = kmeans.predict(&x).unwrap();
for i in 0..y.len() { for (i, _y_i) in y.iter().enumerate() {
assert_eq!(y[i] as usize, kmeans._y[i]); assert_eq!({ y[i] }, kmeans._y[i]);
}
}
#[cfg_attr(
all(target_arch = "wasm32", not(target_os = "wasi")),
wasm_bindgen_test::wasm_bindgen_test
)]
#[test]
fn fit_with_centroids_predict() {
let x = DenseMatrix::from_2d_array(&[
&[5.1, 3.5, 1.4, 0.2],
&[4.9, 3.0, 1.4, 0.2],
&[4.7, 3.2, 1.3, 0.2],
&[4.6, 3.1, 1.5, 0.2],
&[5.0, 3.6, 1.4, 0.2],
&[5.4, 3.9, 1.7, 0.4],
&[4.6, 3.4, 1.4, 0.3],
&[5.0, 3.4, 1.5, 0.2],
&[4.4, 2.9, 1.4, 0.2],
&[4.9, 3.1, 1.5, 0.1],
&[7.0, 3.2, 4.7, 1.4],
&[6.4, 3.2, 4.5, 1.5],
&[6.9, 3.1, 4.9, 1.5],
&[5.5, 2.3, 4.0, 1.3],
&[6.5, 2.8, 4.6, 1.5],
&[5.7, 2.8, 4.5, 1.3],
&[6.3, 3.3, 4.7, 1.6],
&[4.9, 2.4, 3.3, 1.0],
&[6.6, 2.9, 4.6, 1.3],
&[5.2, 2.7, 3.9, 1.4],
]);
let parameters = KMeansParameters {
k: 3,
max_iter: 50,
..Default::default()
};
// compute pairs
let fastpair = fastpair::FastPair::new(&x).unwrap();
// compute centroids for N closest pairs
let mut n: isize = 2;
let mut centroids = vec![vec![0f64; x.shape().1]; n as usize + 1];
for p in fastpair.ordered_pairs() {
if n == -1 {
break
}
centroids[n as usize] = {
let mut result: Vec<f64> = Vec::with_capacity(x.shape().1);
for val1 in x.get_row(p.node).iterator(0) {
for val2 in x.get_row(p.neighbour.unwrap()).iterator(0) {
let sum = val1 + val2;
let avg = sum * 0.5f64;
result.push(avg);
}
}
result
};
n -= 1;
}
let kmeans = KMeans::fit_with_centroids(
&x, parameters, centroids).unwrap();
let y: Vec<usize> = kmeans.predict(&x).unwrap();
for (i, _y_i) in y.iter().enumerate() {
assert_eq!({ y[i] }, kmeans._y[i]);
} }
} }
+1 -1
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@@ -31,7 +31,7 @@ use crate::dataset::Dataset;
pub fn load_dataset() -> Dataset<f32, f32> { pub fn load_dataset() -> Dataset<f32, f32> {
let (x, y, num_samples, num_features) = match deserialize_data(std::include_bytes!("boston.xy")) let (x, y, num_samples, num_features) = match deserialize_data(std::include_bytes!("boston.xy"))
{ {
Err(why) => panic!("Can't deserialize boston.xy. {}", why), Err(why) => panic!("Can't deserialize boston.xy. {why}"),
Ok((x, y, num_samples, num_features)) => (x, y, num_samples, num_features), Ok((x, y, num_samples, num_features)) => (x, y, num_samples, num_features),
}; };
+1 -1
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@@ -33,7 +33,7 @@ use crate::dataset::Dataset;
pub fn load_dataset() -> Dataset<f32, u32> { pub fn load_dataset() -> Dataset<f32, u32> {
let (x, y, num_samples, num_features) = let (x, y, num_samples, num_features) =
match deserialize_data(std::include_bytes!("breast_cancer.xy")) { match deserialize_data(std::include_bytes!("breast_cancer.xy")) {
Err(why) => panic!("Can't deserialize breast_cancer.xy. {}", why), Err(why) => panic!("Can't deserialize breast_cancer.xy. {why}"),
Ok((x, y, num_samples, num_features)) => ( Ok((x, y, num_samples, num_features)) => (
x, x,
y.into_iter().map(|x| x as u32).collect(), y.into_iter().map(|x| x as u32).collect(),
+1 -1
View File
@@ -26,7 +26,7 @@ use crate::dataset::Dataset;
pub fn load_dataset() -> Dataset<f32, u32> { pub fn load_dataset() -> Dataset<f32, u32> {
let (x, y, num_samples, num_features) = let (x, y, num_samples, num_features) =
match deserialize_data(std::include_bytes!("diabetes.xy")) { match deserialize_data(std::include_bytes!("diabetes.xy")) {
Err(why) => panic!("Can't deserialize diabetes.xy. {}", why), Err(why) => panic!("Can't deserialize diabetes.xy. {why}"),
Ok((x, y, num_samples, num_features)) => ( Ok((x, y, num_samples, num_features)) => (
x, x,
y.into_iter().map(|x| x as u32).collect(), y.into_iter().map(|x| x as u32).collect(),
+1 -1
View File
@@ -16,7 +16,7 @@ use crate::dataset::Dataset;
pub fn load_dataset() -> Dataset<f32, f32> { pub fn load_dataset() -> Dataset<f32, f32> {
let (x, y, num_samples, num_features) = match deserialize_data(std::include_bytes!("digits.xy")) let (x, y, num_samples, num_features) = match deserialize_data(std::include_bytes!("digits.xy"))
{ {
Err(why) => panic!("Can't deserialize digits.xy. {}", why), Err(why) => panic!("Can't deserialize digits.xy. {why}"),
Ok((x, y, num_samples, num_features)) => (x, y, num_samples, num_features), Ok((x, y, num_samples, num_features)) => (x, y, num_samples, num_features),
}; };
+1 -1
View File
@@ -22,7 +22,7 @@ use crate::dataset::Dataset;
pub fn load_dataset() -> Dataset<f32, u32> { pub fn load_dataset() -> Dataset<f32, u32> {
let (x, y, num_samples, num_features): (Vec<f32>, Vec<u32>, usize, usize) = let (x, y, num_samples, num_features): (Vec<f32>, Vec<u32>, usize, usize) =
match deserialize_data(std::include_bytes!("iris.xy")) { match deserialize_data(std::include_bytes!("iris.xy")) {
Err(why) => panic!("Can't deserialize iris.xy. {}", why), Err(why) => panic!("Can't deserialize iris.xy. {why}"),
Ok((x, y, num_samples, num_features)) => ( Ok((x, y, num_samples, num_features)) => (
x, x,
y.into_iter().map(|x| x as u32).collect(), y.into_iter().map(|x| x as u32).collect(),
+1 -1
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@@ -78,7 +78,7 @@ pub(crate) fn serialize_data<X: Number + RealNumber, Y: RealNumber>(
.collect(); .collect();
file.write_all(&y)?; file.write_all(&y)?;
} }
Err(why) => panic!("couldn't create {}: {}", filename, why), Err(why) => panic!("couldn't create {filename}: {why}"),
} }
Ok(()) Ok(())
} }
+9 -11
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@@ -231,8 +231,7 @@ impl<T: Number + RealNumber, X: Array2<T> + SVDDecomposable<T> + EVDDecomposable
if parameters.n_components > n { if parameters.n_components > n {
return Err(Failed::fit(&format!( return Err(Failed::fit(&format!(
"Number of components, n_components should be <= number of attributes ({})", "Number of components, n_components should be <= number of attributes ({n})"
n
))); )));
} }
@@ -374,21 +373,20 @@ mod tests {
let parameters = PCASearchParameters { let parameters = PCASearchParameters {
n_components: vec![2, 4], n_components: vec![2, 4],
use_correlation_matrix: vec![true, false], use_correlation_matrix: vec![true, false],
..Default::default()
}; };
let mut iter = parameters.into_iter(); let mut iter = parameters.into_iter();
let next = iter.next().unwrap(); let next = iter.next().unwrap();
assert_eq!(next.n_components, 2); assert_eq!(next.n_components, 2);
assert_eq!(next.use_correlation_matrix, true); assert!(next.use_correlation_matrix);
let next = iter.next().unwrap(); let next = iter.next().unwrap();
assert_eq!(next.n_components, 4); assert_eq!(next.n_components, 4);
assert_eq!(next.use_correlation_matrix, true); assert!(next.use_correlation_matrix);
let next = iter.next().unwrap(); let next = iter.next().unwrap();
assert_eq!(next.n_components, 2); assert_eq!(next.n_components, 2);
assert_eq!(next.use_correlation_matrix, false); assert!(!next.use_correlation_matrix);
let next = iter.next().unwrap(); let next = iter.next().unwrap();
assert_eq!(next.n_components, 4); assert_eq!(next.n_components, 4);
assert_eq!(next.use_correlation_matrix, false); assert!(!next.use_correlation_matrix);
assert!(iter.next().is_none()); assert!(iter.next().is_none());
} }
@@ -572,8 +570,8 @@ mod tests {
epsilon = 1e-4 epsilon = 1e-4
)); ));
for i in 0..pca.eigenvalues.len() { for (i, pca_eigenvalues_i) in pca.eigenvalues.iter().enumerate() {
assert!((pca.eigenvalues[i].abs() - expected_eigenvalues[i].abs()).abs() < 1e-8); assert!((pca_eigenvalues_i.abs() - expected_eigenvalues[i].abs()).abs() < 1e-8);
} }
let us_arrests_t = pca.transform(&us_arrests).unwrap(); let us_arrests_t = pca.transform(&us_arrests).unwrap();
@@ -694,8 +692,8 @@ mod tests {
epsilon = 1e-4 epsilon = 1e-4
)); ));
for i in 0..pca.eigenvalues.len() { for (i, pca_eigenvalues_i) in pca.eigenvalues.iter().enumerate() {
assert!((pca.eigenvalues[i].abs() - expected_eigenvalues[i].abs()).abs() < 1e-8); assert!((pca_eigenvalues_i.abs() - expected_eigenvalues[i].abs()).abs() < 1e-8);
} }
let us_arrests_t = pca.transform(&us_arrests).unwrap(); let us_arrests_t = pca.transform(&us_arrests).unwrap();
+2 -5
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@@ -180,8 +180,7 @@ impl<T: Number + RealNumber, X: Array2<T> + SVDDecomposable<T> + EVDDecomposable
if parameters.n_components >= p { if parameters.n_components >= p {
return Err(Failed::fit(&format!( return Err(Failed::fit(&format!(
"Number of components, n_components should be < number of attributes ({})", "Number of components, n_components should be < number of attributes ({p})"
p
))); )));
} }
@@ -202,8 +201,7 @@ impl<T: Number + RealNumber, X: Array2<T> + SVDDecomposable<T> + EVDDecomposable
let (p_c, k) = self.components.shape(); let (p_c, k) = self.components.shape();
if p_c != p { if p_c != p {
return Err(Failed::transform(&format!( return Err(Failed::transform(&format!(
"Can not transform a {}x{} matrix into {}x{} matrix, incorrect input dimentions", "Can not transform a {n}x{p} matrix into {n}x{k} matrix, incorrect input dimentions"
n, p, n, k
))); )));
} }
@@ -227,7 +225,6 @@ mod tests {
fn search_parameters() { fn search_parameters() {
let parameters = SVDSearchParameters { let parameters = SVDSearchParameters {
n_components: vec![10, 100], n_components: vec![10, 100],
..Default::default()
}; };
let mut iter = parameters.into_iter(); let mut iter = parameters.into_iter();
let next = iter.next().unwrap(); let next = iter.next().unwrap();
+29 -1
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@@ -454,8 +454,12 @@ impl<TX: FloatNumber + PartialOrd, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY
y: &Y, y: &Y,
parameters: RandomForestClassifierParameters, parameters: RandomForestClassifierParameters,
) -> Result<RandomForestClassifier<TX, TY, X, Y>, Failed> { ) -> Result<RandomForestClassifier<TX, TY, X, Y>, Failed> {
let (_, num_attributes) = x.shape(); let (x_nrows, num_attributes) = x.shape();
let y_ncols = y.shape(); let y_ncols = y.shape();
if x_nrows != y_ncols {
return Err(Failed::fit("Number of rows in X should = len(y)"));
}
let mut yi: Vec<usize> = vec![0; y_ncols]; let mut yi: Vec<usize> = vec![0; y_ncols];
let classes = y.unique(); let classes = y.unique();
@@ -678,6 +682,30 @@ mod tests {
assert!(accuracy(&y, &classifier.predict(&x).unwrap()) >= 0.95); assert!(accuracy(&y, &classifier.predict(&x).unwrap()) >= 0.95);
} }
#[test]
fn test_random_matrix_with_wrong_rownum() {
let x_rand: DenseMatrix<f64> = DenseMatrix::<f64>::rand(21, 200);
let y: Vec<u32> = vec![0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1];
let fail = RandomForestClassifier::fit(
&x_rand,
&y,
RandomForestClassifierParameters {
criterion: SplitCriterion::Gini,
max_depth: Option::None,
min_samples_leaf: 1,
min_samples_split: 2,
n_trees: 100,
m: Option::None,
keep_samples: false,
seed: 87,
},
);
assert!(fail.is_err());
}
#[cfg_attr( #[cfg_attr(
all(target_arch = "wasm32", not(target_os = "wasi")), all(target_arch = "wasm32", not(target_os = "wasi")),
wasm_bindgen_test::wasm_bindgen_test wasm_bindgen_test::wasm_bindgen_test
+30
View File
@@ -399,6 +399,10 @@ impl<TX: Number + FloatNumber + PartialOrd, TY: Number, X: Array2<TX>, Y: Array1
) -> Result<RandomForestRegressor<TX, TY, X, Y>, Failed> { ) -> Result<RandomForestRegressor<TX, TY, X, Y>, Failed> {
let (n_rows, num_attributes) = x.shape(); let (n_rows, num_attributes) = x.shape();
if n_rows != y.shape() {
return Err(Failed::fit("Number of rows in X should = len(y)"));
}
let mtry = parameters let mtry = parameters
.m .m
.unwrap_or((num_attributes as f64).sqrt().floor() as usize); .unwrap_or((num_attributes as f64).sqrt().floor() as usize);
@@ -595,6 +599,32 @@ mod tests {
assert!(mean_absolute_error(&y, &y_hat) < 1.0); assert!(mean_absolute_error(&y, &y_hat) < 1.0);
} }
#[test]
fn test_random_matrix_with_wrong_rownum() {
let x_rand: DenseMatrix<f64> = DenseMatrix::<f64>::rand(17, 200);
let y = vec![
83.0, 88.5, 88.2, 89.5, 96.2, 98.1, 99.0, 100.0, 101.2, 104.6, 108.4, 110.8, 112.6,
114.2, 115.7, 116.9,
];
let fail = RandomForestRegressor::fit(
&x_rand,
&y,
RandomForestRegressorParameters {
max_depth: Option::None,
min_samples_leaf: 1,
min_samples_split: 2,
n_trees: 1000,
m: Option::None,
keep_samples: false,
seed: 87,
},
);
assert!(fail.is_err());
}
#[cfg_attr( #[cfg_attr(
all(target_arch = "wasm32", not(target_os = "wasi")), all(target_arch = "wasm32", not(target_os = "wasi")),
wasm_bindgen_test::wasm_bindgen_test wasm_bindgen_test::wasm_bindgen_test
+2 -2
View File
@@ -30,7 +30,7 @@ pub enum FailedError {
DecompositionFailed, DecompositionFailed,
/// Can't solve for x /// Can't solve for x
SolutionFailed, SolutionFailed,
/// Erro in input /// Error in input parameters
ParametersError, ParametersError,
} }
@@ -98,7 +98,7 @@ impl fmt::Display for FailedError {
FailedError::SolutionFailed => "Can't find solution", FailedError::SolutionFailed => "Can't find solution",
FailedError::ParametersError => "Error in input, check parameters", FailedError::ParametersError => "Error in input, check parameters",
}; };
write!(f, "{}", failed_err_str) write!(f, "{failed_err_str}")
} }
} }
+2 -1
View File
@@ -3,7 +3,8 @@
clippy::too_many_arguments, clippy::too_many_arguments,
clippy::many_single_char_names, clippy::many_single_char_names,
clippy::unnecessary_wraps, clippy::unnecessary_wraps,
clippy::upper_case_acronyms clippy::upper_case_acronyms,
clippy::approx_constant
)] )]
#![warn(missing_docs)] #![warn(missing_docs)]
#![warn(rustdoc::missing_doc_code_examples)] #![warn(rustdoc::missing_doc_code_examples)]
+13 -30
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@@ -548,7 +548,7 @@ pub trait ArrayView2<T: Debug + Display + Copy + Sized>: Array<T, (usize, usize)
let (nrows, ncols) = self.shape(); let (nrows, ncols) = self.shape();
for r in 0..nrows { for r in 0..nrows {
let row: Vec<T> = (0..ncols).map(|c| *self.get((r, c))).collect(); let row: Vec<T> = (0..ncols).map(|c| *self.get((r, c))).collect();
writeln!(f, "{:?}", row)? writeln!(f, "{row:?}")?
} }
Ok(()) Ok(())
} }
@@ -918,8 +918,7 @@ pub trait Array1<T: Debug + Display + Copy + Sized>: MutArrayView1<T> + Sized +
let len = self.shape(); let len = self.shape();
assert!( assert!(
index.iter().all(|&i| i < len), index.iter().all(|&i| i < len),
"All indices in `take` should be < {}", "All indices in `take` should be < {len}"
len
); );
Self::from_iterator(index.iter().map(move |&i| *self.get(i)), index.len()) Self::from_iterator(index.iter().map(move |&i| *self.get(i)), index.len())
} }
@@ -990,10 +989,7 @@ pub trait Array1<T: Debug + Display + Copy + Sized>: MutArrayView1<T> + Sized +
}; };
assert!( assert!(
d1 == len, d1 == len,
"Can not multiply {}x{} matrix by {} vector", "Can not multiply {nrows}x{ncols} matrix by {len} vector"
nrows,
ncols,
len
); );
let mut result = Self::zeros(d2); let mut result = Self::zeros(d2);
for i in 0..d2 { for i in 0..d2 {
@@ -1111,11 +1107,7 @@ pub trait Array2<T: Debug + Display + Copy + Sized>: MutArrayView2<T> + Sized +
assert!( assert!(
nrows * ncols == onrows * oncols, nrows * ncols == onrows * oncols,
"Can't reshape {}x{} array into a {}x{} array", "Can't reshape {onrows}x{oncols} array into a {nrows}x{ncols} array"
onrows,
oncols,
nrows,
ncols
); );
Self::from_iterator(self.iterator(0).cloned(), nrows, ncols, axis) Self::from_iterator(self.iterator(0).cloned(), nrows, ncols, axis)
@@ -1129,11 +1121,7 @@ pub trait Array2<T: Debug + Display + Copy + Sized>: MutArrayView2<T> + Sized +
let (o_nrows, o_ncols) = other.shape(); let (o_nrows, o_ncols) = other.shape();
assert!( assert!(
ncols == o_nrows, ncols == o_nrows,
"Can't multiply {}x{} and {}x{} matrices", "Can't multiply {nrows}x{ncols} and {o_nrows}x{o_ncols} matrices"
nrows,
ncols,
o_nrows,
o_ncols
); );
let inner_d = ncols; let inner_d = ncols;
let mut result = Self::zeros(nrows, o_ncols); let mut result = Self::zeros(nrows, o_ncols);
@@ -1166,7 +1154,7 @@ pub trait Array2<T: Debug + Display + Copy + Sized>: MutArrayView2<T> + Sized +
_ => (nrows, ncols, o_nrows, o_ncols), _ => (nrows, ncols, o_nrows, o_ncols),
}; };
if d1 != d4 { if d1 != d4 {
panic!("Can not multiply {}x{} by {}x{} matrices", d2, d1, d4, d3); panic!("Can not multiply {d2}x{d1} by {d4}x{d3} matrices");
} }
let mut result = Self::zeros(d2, d3); let mut result = Self::zeros(d2, d3);
for r in 0..d2 { for r in 0..d2 {
@@ -1198,10 +1186,7 @@ pub trait Array2<T: Debug + Display + Copy + Sized>: MutArrayView2<T> + Sized +
}; };
assert!( assert!(
d2 == len, d2 == len,
"Can not multiply {}x{} matrix by {} vector", "Can not multiply {nrows}x{ncols} matrix by {len} vector"
nrows,
ncols,
len
); );
let mut result = Self::zeros(d1, 1); let mut result = Self::zeros(d1, 1);
for i in 0..d1 { for i in 0..d1 {
@@ -1432,8 +1417,7 @@ pub trait Array2<T: Debug + Display + Copy + Sized>: MutArrayView2<T> + Sized +
0 => { 0 => {
assert!( assert!(
index.iter().all(|&i| i < nrows), index.iter().all(|&i| i < nrows),
"All indices in `take` should be < {}", "All indices in `take` should be < {nrows}"
nrows
); );
Self::from_iterator( Self::from_iterator(
index index
@@ -1448,8 +1432,7 @@ pub trait Array2<T: Debug + Display + Copy + Sized>: MutArrayView2<T> + Sized +
_ => { _ => {
assert!( assert!(
index.iter().all(|&i| i < ncols), index.iter().all(|&i| i < ncols),
"All indices in `take` should be < {}", "All indices in `take` should be < {ncols}"
ncols
); );
Self::from_iterator( Self::from_iterator(
(0..nrows) (0..nrows)
@@ -1587,7 +1570,7 @@ pub trait Array2<T: Debug + Display + Copy + Sized>: MutArrayView2<T> + Sized +
mean mean
} }
/// copy coumn as a vector /// copy column as a vector
fn copy_col_as_vec(&self, col: usize, result: &mut Vec<T>) { fn copy_col_as_vec(&self, col: usize, result: &mut Vec<T>) {
for (r, result_r) in result.iter_mut().enumerate().take(self.shape().0) { for (r, result_r) in result.iter_mut().enumerate().take(self.shape().0) {
*result_r = *self.get((r, col)); *result_r = *self.get((r, col));
@@ -1736,7 +1719,7 @@ mod tests {
let r = Vec::<f32>::rand(4); let r = Vec::<f32>::rand(4);
assert!(r.iterator(0).all(|&e| e <= 1f32)); assert!(r.iterator(0).all(|&e| e <= 1f32));
assert!(r.iterator(0).all(|&e| e >= 0f32)); assert!(r.iterator(0).all(|&e| e >= 0f32));
assert!(r.iterator(0).map(|v| *v).sum::<f32>() > 0f32); assert!(r.iterator(0).copied().sum::<f32>() > 0f32);
} }
#[test] #[test]
@@ -1954,7 +1937,7 @@ mod tests {
DenseMatrix::from_2d_array(&[&[1, 3], &[2, 4]]) DenseMatrix::from_2d_array(&[&[1, 3], &[2, 4]])
); );
assert_eq!( assert_eq!(
DenseMatrix::concatenate_2d(&[&a.clone(), &b.clone()], 0), DenseMatrix::concatenate_2d(&[&a, &b], 0),
DenseMatrix::from_2d_array(&[&[1, 2], &[3, 4], &[5, 6], &[7, 8]]) DenseMatrix::from_2d_array(&[&[1, 2], &[3, 4], &[5, 6], &[7, 8]])
); );
assert_eq!( assert_eq!(
@@ -2025,7 +2008,7 @@ mod tests {
let r = DenseMatrix::<f32>::rand(2, 2); let r = DenseMatrix::<f32>::rand(2, 2);
assert!(r.iterator(0).all(|&e| e <= 1f32)); assert!(r.iterator(0).all(|&e| e <= 1f32));
assert!(r.iterator(0).all(|&e| e >= 0f32)); assert!(r.iterator(0).all(|&e| e >= 0f32));
assert!(r.iterator(0).map(|v| *v).sum::<f32>() > 0f32); assert!(r.iterator(0).copied().sum::<f32>() > 0f32);
} }
#[test] #[test]
+15 -15
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@@ -431,9 +431,9 @@ impl<T: Number + RealNumber> SVDDecomposable<T> for DenseMatrix<T> {}
impl<'a, T: Debug + Display + Copy + Sized> Array<T, (usize, usize)> for DenseMatrixView<'a, T> { impl<'a, T: Debug + Display + Copy + Sized> Array<T, (usize, usize)> for DenseMatrixView<'a, T> {
fn get(&self, pos: (usize, usize)) -> &T { fn get(&self, pos: (usize, usize)) -> &T {
if self.column_major { if self.column_major {
&self.values[(pos.0 + pos.1 * self.stride)] &self.values[pos.0 + pos.1 * self.stride]
} else { } else {
&self.values[(pos.0 * self.stride + pos.1)] &self.values[pos.0 * self.stride + pos.1]
} }
} }
@@ -495,9 +495,9 @@ impl<'a, T: Debug + Display + Copy + Sized> ArrayView1<T> for DenseMatrixView<'a
impl<'a, T: Debug + Display + Copy + Sized> Array<T, (usize, usize)> for DenseMatrixMutView<'a, T> { impl<'a, T: Debug + Display + Copy + Sized> Array<T, (usize, usize)> for DenseMatrixMutView<'a, T> {
fn get(&self, pos: (usize, usize)) -> &T { fn get(&self, pos: (usize, usize)) -> &T {
if self.column_major { if self.column_major {
&self.values[(pos.0 + pos.1 * self.stride)] &self.values[pos.0 + pos.1 * self.stride]
} else { } else {
&self.values[(pos.0 * self.stride + pos.1)] &self.values[pos.0 * self.stride + pos.1]
} }
} }
@@ -519,9 +519,9 @@ impl<'a, T: Debug + Display + Copy + Sized> MutArray<T, (usize, usize)>
{ {
fn set(&mut self, pos: (usize, usize), x: T) { fn set(&mut self, pos: (usize, usize), x: T) {
if self.column_major { if self.column_major {
self.values[(pos.0 + pos.1 * self.stride)] = x; self.values[pos.0 + pos.1 * self.stride] = x;
} else { } else {
self.values[(pos.0 * self.stride + pos.1)] = x; self.values[pos.0 * self.stride + pos.1] = x;
} }
} }
@@ -581,9 +581,9 @@ mod tests {
vec![4, 5, 6], vec![4, 5, 6],
DenseMatrix::from_slice(&(*x.slice(1..2, 0..3))).values DenseMatrix::from_slice(&(*x.slice(1..2, 0..3))).values
); );
let second_row: Vec<i32> = x.slice(1..2, 0..3).iterator(0).map(|x| *x).collect(); let second_row: Vec<i32> = x.slice(1..2, 0..3).iterator(0).copied().collect();
assert_eq!(vec![4, 5, 6], second_row); assert_eq!(vec![4, 5, 6], second_row);
let second_col: Vec<i32> = x.slice(0..3, 1..2).iterator(0).map(|x| *x).collect(); let second_col: Vec<i32> = x.slice(0..3, 1..2).iterator(0).copied().collect();
assert_eq!(vec![2, 5, 8], second_col); assert_eq!(vec![2, 5, 8], second_col);
} }
@@ -640,12 +640,12 @@ mod tests {
let x = DenseMatrix::<&str>::from_2d_array(&[&["1", "2", "3"], &["4", "5", "6"]]); let x = DenseMatrix::<&str>::from_2d_array(&[&["1", "2", "3"], &["4", "5", "6"]]);
assert_eq!(vec!["1", "4", "2", "5", "3", "6"], x.values); assert_eq!(vec!["1", "4", "2", "5", "3", "6"], x.values);
assert!(x.column_major == true); assert!(x.column_major);
// transpose // transpose
let x = x.transpose(); let x = x.transpose();
assert_eq!(vec!["1", "4", "2", "5", "3", "6"], x.values); assert_eq!(vec!["1", "4", "2", "5", "3", "6"], x.values);
assert!(x.column_major == false); // should change column_major assert!(!x.column_major); // should change column_major
} }
#[test] #[test]
@@ -659,7 +659,7 @@ mod tests {
vec![1, 2, 3, 4, 5, 6], vec![1, 2, 3, 4, 5, 6],
m.values.iter().map(|e| **e).collect::<Vec<i32>>() m.values.iter().map(|e| **e).collect::<Vec<i32>>()
); );
assert!(m.column_major == false); assert!(!m.column_major);
} }
#[test] #[test]
@@ -667,10 +667,10 @@ mod tests {
let a = DenseMatrix::from_2d_array(&[&[1, 2, 3], &[4, 5, 6]]); let a = DenseMatrix::from_2d_array(&[&[1, 2, 3], &[4, 5, 6]]);
let b = DenseMatrix::from_2d_array(&[&[1, 2], &[3, 4], &[5, 6]]); let b = DenseMatrix::from_2d_array(&[&[1, 2], &[3, 4], &[5, 6]]);
println!("{}", a); println!("{a}");
// take column 0 and 2 // take column 0 and 2
assert_eq!(vec![1, 3, 4, 6], a.take(&[0, 2], 1).values); assert_eq!(vec![1, 3, 4, 6], a.take(&[0, 2], 1).values);
println!("{}", b); println!("{b}");
// take rows 0 and 2 // take rows 0 and 2
assert_eq!(vec![1, 2, 5, 6], b.take(&[0, 2], 0).values); assert_eq!(vec![1, 2, 5, 6], b.take(&[0, 2], 0).values);
} }
@@ -692,11 +692,11 @@ mod tests {
let a = a.reshape(2, 6, 0); let a = a.reshape(2, 6, 0);
assert_eq!(vec![1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12], a.values); assert_eq!(vec![1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12], a.values);
assert!(a.ncols == 6 && a.nrows == 2 && a.column_major == false); assert!(a.ncols == 6 && a.nrows == 2 && !a.column_major);
let a = a.reshape(3, 4, 1); let a = a.reshape(3, 4, 1);
assert_eq!(vec![1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12], a.values); assert_eq!(vec![1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12], a.values);
assert!(a.ncols == 4 && a.nrows == 3 && a.column_major == true); assert!(a.ncols == 4 && a.nrows == 3 && a.column_major);
} }
#[test] #[test]
+23 -3
View File
@@ -15,6 +15,25 @@ pub struct VecView<'a, T: Debug + Display + Copy + Sized> {
ptr: &'a [T], ptr: &'a [T],
} }
impl<T: Debug + Display + Copy + Sized> Array<T, usize> for &[T] {
fn get(&self, i: usize) -> &T {
&self[i]
}
fn shape(&self) -> usize {
self.len()
}
fn is_empty(&self) -> bool {
self.len() > 0
}
fn iterator<'b>(&'b self, axis: u8) -> Box<dyn Iterator<Item = &'b T> + 'b> {
assert!(axis == 0, "For one dimensional array `axis` should == 0");
Box::new(self.iter())
}
}
impl<T: Debug + Display + Copy + Sized> Array<T, usize> for Vec<T> { impl<T: Debug + Display + Copy + Sized> Array<T, usize> for Vec<T> {
fn get(&self, i: usize) -> &T { fn get(&self, i: usize) -> &T {
&self[i] &self[i]
@@ -46,6 +65,7 @@ impl<T: Debug + Display + Copy + Sized> MutArray<T, usize> for Vec<T> {
} }
impl<T: Debug + Display + Copy + Sized> ArrayView1<T> for Vec<T> {} impl<T: Debug + Display + Copy + Sized> ArrayView1<T> for Vec<T> {}
impl<T: Debug + Display + Copy + Sized> ArrayView1<T> for &[T] {}
impl<T: Debug + Display + Copy + Sized> MutArrayView1<T> for Vec<T> {} impl<T: Debug + Display + Copy + Sized> MutArrayView1<T> for Vec<T> {}
@@ -160,8 +180,8 @@ mod tests {
fn dot_product<T: Number, V: Array1<T>>(v: &V) -> T { fn dot_product<T: Number, V: Array1<T>>(v: &V) -> T {
let vv = V::zeros(10); let vv = V::zeros(10);
let v_s = vv.slice(0..3); let v_s = vv.slice(0..3);
let dot = v_s.dot(v);
dot v_s.dot(v)
} }
fn vector_ops<T: Number + PartialOrd, V: Array1<T>>(_: &V) -> T { fn vector_ops<T: Number + PartialOrd, V: Array1<T>>(_: &V) -> T {
@@ -216,7 +236,7 @@ mod tests {
#[test] #[test]
fn test_mut_iterator() { fn test_mut_iterator() {
let mut x = vec![1, 2, 3]; let mut x = vec![1, 2, 3];
x.iterator_mut(0).for_each(|v| *v = *v * 2); x.iterator_mut(0).for_each(|v| *v *= 2);
assert_eq!(vec![2, 4, 6], x); assert_eq!(vec![2, 4, 6], x);
} }
+6 -6
View File
@@ -217,7 +217,7 @@ mod tests {
fn test_iterator() { fn test_iterator() {
let a = arr2(&[[1, 2, 3], [4, 5, 6]]); let a = arr2(&[[1, 2, 3], [4, 5, 6]]);
let v: Vec<i32> = a.iterator(0).map(|&v| v).collect(); let v: Vec<i32> = a.iterator(0).copied().collect();
assert_eq!(v, vec!(1, 2, 3, 4, 5, 6)); assert_eq!(v, vec!(1, 2, 3, 4, 5, 6));
} }
@@ -236,7 +236,7 @@ mod tests {
let x = arr2(&[[1, 2, 3], [4, 5, 6]]); let x = arr2(&[[1, 2, 3], [4, 5, 6]]);
let x_slice = Array2::slice(&x, 0..2, 1..2); let x_slice = Array2::slice(&x, 0..2, 1..2);
assert_eq!((2, 1), x_slice.shape()); assert_eq!((2, 1), x_slice.shape());
let v: Vec<i32> = x_slice.iterator(0).map(|&v| v).collect(); let v: Vec<i32> = x_slice.iterator(0).copied().collect();
assert_eq!(v, [2, 5]); assert_eq!(v, [2, 5]);
} }
@@ -245,11 +245,11 @@ mod tests {
let x = arr2(&[[1, 2, 3], [4, 5, 6]]); let x = arr2(&[[1, 2, 3], [4, 5, 6]]);
let x_slice = Array2::slice(&x, 0..2, 0..3); let x_slice = Array2::slice(&x, 0..2, 0..3);
assert_eq!( assert_eq!(
x_slice.iterator(0).map(|&v| v).collect::<Vec<i32>>(), x_slice.iterator(0).copied().collect::<Vec<i32>>(),
vec![1, 2, 3, 4, 5, 6] vec![1, 2, 3, 4, 5, 6]
); );
assert_eq!( assert_eq!(
x_slice.iterator(1).map(|&v| v).collect::<Vec<i32>>(), x_slice.iterator(1).copied().collect::<Vec<i32>>(),
vec![1, 4, 2, 5, 3, 6] vec![1, 4, 2, 5, 3, 6]
); );
} }
@@ -279,8 +279,8 @@ mod tests {
fn test_c_from_iterator() { fn test_c_from_iterator() {
let data = vec![1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12]; let data = vec![1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12];
let a: NDArray2<i32> = Array2::from_iterator(data.clone().into_iter(), 4, 3, 0); let a: NDArray2<i32> = Array2::from_iterator(data.clone().into_iter(), 4, 3, 0);
println!("{}", a); println!("{a}");
let a: NDArray2<i32> = Array2::from_iterator(data.into_iter(), 4, 3, 1); let a: NDArray2<i32> = Array2::from_iterator(data.into_iter(), 4, 3, 1);
println!("{}", a); println!("{a}");
} }
} }
+1 -1
View File
@@ -152,7 +152,7 @@ mod tests {
fn test_iterator() { fn test_iterator() {
let a = arr1(&[1, 2, 3]); let a = arr1(&[1, 2, 3]);
let v: Vec<i32> = a.iterator(0).map(|&v| v).collect(); let v: Vec<i32> = a.iterator(0).copied().collect();
assert_eq!(v, vec!(1, 2, 3)); assert_eq!(v, vec!(1, 2, 3));
} }
+9 -13
View File
@@ -66,7 +66,7 @@ pub trait EVDDecomposable<T: Number + RealNumber>: Array2<T> {
fn evd_mut(mut self, symmetric: bool) -> Result<EVD<T, Self>, Failed> { fn evd_mut(mut self, symmetric: bool) -> Result<EVD<T, Self>, Failed> {
let (nrows, ncols) = self.shape(); let (nrows, ncols) = self.shape();
if ncols != nrows { if ncols != nrows {
panic!("Matrix is not square: {} x {}", nrows, ncols); panic!("Matrix is not square: {nrows} x {ncols}");
} }
let n = nrows; let n = nrows;
@@ -837,10 +837,8 @@ mod tests {
evd.V.abs(), evd.V.abs(),
epsilon = 1e-4 epsilon = 1e-4
)); ));
for i in 0..eigen_values.len() { for (i, eigen_values_i) in eigen_values.iter().enumerate() {
assert!((eigen_values[i] - evd.d[i]).abs() < 1e-4); assert!((eigen_values_i - evd.d[i]).abs() < 1e-4);
}
for i in 0..eigen_values.len() {
assert!((0f64 - evd.e[i]).abs() < std::f64::EPSILON); assert!((0f64 - evd.e[i]).abs() < std::f64::EPSILON);
} }
} }
@@ -871,10 +869,8 @@ mod tests {
evd.V.abs(), evd.V.abs(),
epsilon = 1e-4 epsilon = 1e-4
)); ));
for i in 0..eigen_values.len() { for (i, eigen_values_i) in eigen_values.iter().enumerate() {
assert!((eigen_values[i] - evd.d[i]).abs() < 1e-4); assert!((eigen_values_i - evd.d[i]).abs() < 1e-4);
}
for i in 0..eigen_values.len() {
assert!((0f64 - evd.e[i]).abs() < std::f64::EPSILON); assert!((0f64 - evd.e[i]).abs() < std::f64::EPSILON);
} }
} }
@@ -908,11 +904,11 @@ mod tests {
evd.V.abs(), evd.V.abs(),
epsilon = 1e-4 epsilon = 1e-4
)); ));
for i in 0..eigen_values_d.len() { for (i, eigen_values_d_i) in eigen_values_d.iter().enumerate() {
assert!((eigen_values_d[i] - evd.d[i]).abs() < 1e-4); assert!((eigen_values_d_i - evd.d[i]).abs() < 1e-4);
} }
for i in 0..eigen_values_e.len() { for (i, eigen_values_e_i) in eigen_values_e.iter().enumerate() {
assert!((eigen_values_e[i] - evd.e[i]).abs() < 1e-4); assert!((eigen_values_e_i - evd.e[i]).abs() < 1e-4);
} }
} }
} }
+2 -5
View File
@@ -126,7 +126,7 @@ impl<T: Number + RealNumber, M: Array2<T>> LU<T, M> {
let (m, n) = self.LU.shape(); let (m, n) = self.LU.shape();
if m != n { if m != n {
panic!("Matrix is not square: {}x{}", m, n); panic!("Matrix is not square: {m}x{n}");
} }
let mut inv = M::zeros(n, n); let mut inv = M::zeros(n, n);
@@ -143,10 +143,7 @@ impl<T: Number + RealNumber, M: Array2<T>> LU<T, M> {
let (b_m, b_n) = b.shape(); let (b_m, b_n) = b.shape();
if b_m != m { if b_m != m {
panic!( panic!("Row dimensions do not agree: A is {m} x {n}, but B is {b_m} x {b_n}");
"Row dimensions do not agree: A is {} x {}, but B is {} x {}",
m, n, b_m, b_n
);
} }
if self.singular { if self.singular {
+1 -4
View File
@@ -102,10 +102,7 @@ impl<T: Number + RealNumber, M: Array2<T>> QR<T, M> {
let (b_nrows, b_ncols) = b.shape(); let (b_nrows, b_ncols) = b.shape();
if b_nrows != m { if b_nrows != m {
panic!( panic!("Row dimensions do not agree: A is {m} x {n}, but B is {b_nrows} x {b_ncols}");
"Row dimensions do not agree: A is {} x {}, but B is {} x {}",
m, n, b_nrows, b_ncols
);
} }
if self.singular { if self.singular {
+1 -1
View File
@@ -286,7 +286,7 @@ mod tests {
} }
{ {
let mut m = m.clone(); let mut m = m;
m.standard_scale_mut(&m.mean(1), &m.std(1), 1); m.standard_scale_mut(&m.mean(1), &m.std(1), 1);
assert_eq!(&m, &expected_1); assert_eq!(&m, &expected_1);
} }
+4 -4
View File
@@ -509,8 +509,8 @@ mod tests {
assert!(relative_eq!(V.abs(), svd.V.abs(), epsilon = 1e-4)); assert!(relative_eq!(V.abs(), svd.V.abs(), epsilon = 1e-4));
assert!(relative_eq!(U.abs(), svd.U.abs(), epsilon = 1e-4)); assert!(relative_eq!(U.abs(), svd.U.abs(), epsilon = 1e-4));
for i in 0..s.len() { for (i, s_i) in s.iter().enumerate() {
assert!((s[i] - svd.s[i]).abs() < 1e-4); assert!((s_i - svd.s[i]).abs() < 1e-4);
} }
} }
#[cfg_attr( #[cfg_attr(
@@ -713,8 +713,8 @@ mod tests {
assert!(relative_eq!(V.abs(), svd.V.abs(), epsilon = 1e-4)); assert!(relative_eq!(V.abs(), svd.V.abs(), epsilon = 1e-4));
assert!(relative_eq!(U.abs(), svd.U.abs(), epsilon = 1e-4)); assert!(relative_eq!(U.abs(), svd.U.abs(), epsilon = 1e-4));
for i in 0..s.len() { for (i, s_i) in s.iter().enumerate() {
assert!((s[i] - svd.s[i]).abs() < 1e-4); assert!((s_i - svd.s[i]).abs() < 1e-4);
} }
} }
#[cfg_attr( #[cfg_attr(
+1 -4
View File
@@ -425,10 +425,7 @@ impl<TX: FloatNumber + RealNumber, TY: Number, X: Array2<TX>, Y: Array1<TY>>
for (i, col_std_i) in col_std.iter().enumerate() { for (i, col_std_i) in col_std.iter().enumerate() {
if (*col_std_i - TX::zero()).abs() < TX::epsilon() { if (*col_std_i - TX::zero()).abs() < TX::epsilon() {
return Err(Failed::fit(&format!( return Err(Failed::fit(&format!("Cannot rescale constant column {i}")));
"Cannot rescale constant column {}",
i
)));
} }
} }
+1 -4
View File
@@ -356,10 +356,7 @@ impl<TX: FloatNumber + RealNumber, TY: Number, X: Array2<TX>, Y: Array1<TY>> Las
for (i, col_std_i) in col_std.iter().enumerate() { for (i, col_std_i) in col_std.iter().enumerate() {
if (*col_std_i - TX::zero()).abs() < TX::epsilon() { if (*col_std_i - TX::zero()).abs() < TX::epsilon() {
return Err(Failed::fit(&format!( return Err(Failed::fit(&format!("Cannot rescale constant column {i}")));
"Cannot rescale constant column {}",
i
)));
} }
} }
+9 -15
View File
@@ -71,19 +71,14 @@ use crate::optimization::line_search::Backtracking;
use crate::optimization::FunctionOrder; use crate::optimization::FunctionOrder;
#[cfg_attr(feature = "serde", derive(Serialize, Deserialize))] #[cfg_attr(feature = "serde", derive(Serialize, Deserialize))]
#[derive(Debug, Clone, Eq, PartialEq)] #[derive(Debug, Clone, Eq, PartialEq, Default)]
/// Solver options for Logistic regression. Right now only LBFGS solver is supported. /// Solver options for Logistic regression. Right now only LBFGS solver is supported.
pub enum LogisticRegressionSolverName { pub enum LogisticRegressionSolverName {
/// Limited-memory BroydenFletcherGoldfarbShanno method, see [LBFGS paper](http://users.iems.northwestern.edu/~nocedal/lbfgsb.html) /// Limited-memory BroydenFletcherGoldfarbShanno method, see [LBFGS paper](http://users.iems.northwestern.edu/~nocedal/lbfgsb.html)
#[default]
LBFGS, LBFGS,
} }
impl Default for LogisticRegressionSolverName {
fn default() -> Self {
LogisticRegressionSolverName::LBFGS
}
}
/// Logistic Regression parameters /// Logistic Regression parameters
#[cfg_attr(feature = "serde", derive(Serialize, Deserialize))] #[cfg_attr(feature = "serde", derive(Serialize, Deserialize))]
#[derive(Debug, Clone)] #[derive(Debug, Clone)]
@@ -449,8 +444,7 @@ impl<TX: Number + FloatNumber + RealNumber, TY: Number + Ord, X: Array2<TX>, Y:
match k.cmp(&2) { match k.cmp(&2) {
Ordering::Less => Err(Failed::fit(&format!( Ordering::Less => Err(Failed::fit(&format!(
"incorrect number of classes: {}. Should be >= 2.", "incorrect number of classes: {k}. Should be >= 2."
k
))), ))),
Ordering::Equal => { Ordering::Equal => {
let x0 = Vec::zeros(num_attributes + 1); let x0 = Vec::zeros(num_attributes + 1);
@@ -636,19 +630,19 @@ mod tests {
assert!((g[0] + 33.000068218163484).abs() < std::f64::EPSILON); assert!((g[0] + 33.000068218163484).abs() < std::f64::EPSILON);
let f = objective.f(&vec![1., 2., 3., 4., 5., 6., 7., 8., 9.]); let f = objective.f(&[1., 2., 3., 4., 5., 6., 7., 8., 9.]);
assert!((f - 408.0052230582765).abs() < std::f64::EPSILON); assert!((f - 408.0052230582765).abs() < std::f64::EPSILON);
let objective_reg = MultiClassObjectiveFunction { let objective_reg = MultiClassObjectiveFunction {
x: &x, x: &x,
y: y.clone(), y,
k: 3, k: 3,
alpha: 1.0, alpha: 1.0,
_phantom_t: PhantomData, _phantom_t: PhantomData,
}; };
let f = objective_reg.f(&vec![1., 2., 3., 4., 5., 6., 7., 8., 9.]); let f = objective_reg.f(&[1., 2., 3., 4., 5., 6., 7., 8., 9.]);
assert!((f - 487.5052).abs() < 1e-4); assert!((f - 487.5052).abs() < 1e-4);
objective_reg.df(&mut g, &vec![1., 2., 3., 4., 5., 6., 7., 8., 9.]); objective_reg.df(&mut g, &vec![1., 2., 3., 4., 5., 6., 7., 8., 9.]);
@@ -697,18 +691,18 @@ mod tests {
assert!((g[1] - 10.239000702928523).abs() < std::f64::EPSILON); assert!((g[1] - 10.239000702928523).abs() < std::f64::EPSILON);
assert!((g[2] - 3.869294270156324).abs() < std::f64::EPSILON); assert!((g[2] - 3.869294270156324).abs() < std::f64::EPSILON);
let f = objective.f(&vec![1., 2., 3.]); let f = objective.f(&[1., 2., 3.]);
assert!((f - 59.76994756647412).abs() < std::f64::EPSILON); assert!((f - 59.76994756647412).abs() < std::f64::EPSILON);
let objective_reg = BinaryObjectiveFunction { let objective_reg = BinaryObjectiveFunction {
x: &x, x: &x,
y: y.clone(), y,
alpha: 1.0, alpha: 1.0,
_phantom_t: PhantomData, _phantom_t: PhantomData,
}; };
let f = objective_reg.f(&vec![1., 2., 3.]); let f = objective_reg.f(&[1., 2., 3.]);
assert!((f - 62.2699).abs() < 1e-4); assert!((f - 62.2699).abs() < 1e-4);
objective_reg.df(&mut g, &vec![1., 2., 3.]); objective_reg.df(&mut g, &vec![1., 2., 3.]);
+3 -11
View File
@@ -71,21 +71,16 @@ use crate::numbers::basenum::Number;
use crate::numbers::realnum::RealNumber; use crate::numbers::realnum::RealNumber;
#[cfg_attr(feature = "serde", derive(Serialize, Deserialize))] #[cfg_attr(feature = "serde", derive(Serialize, Deserialize))]
#[derive(Debug, Clone, Eq, PartialEq)] #[derive(Debug, Clone, Eq, PartialEq, Default)]
/// Approach to use for estimation of regression coefficients. Cholesky is more efficient but SVD is more stable. /// Approach to use for estimation of regression coefficients. Cholesky is more efficient but SVD is more stable.
pub enum RidgeRegressionSolverName { pub enum RidgeRegressionSolverName {
/// Cholesky decomposition, see [Cholesky](../../linalg/cholesky/index.html) /// Cholesky decomposition, see [Cholesky](../../linalg/cholesky/index.html)
#[default]
Cholesky, Cholesky,
/// SVD decomposition, see [SVD](../../linalg/svd/index.html) /// SVD decomposition, see [SVD](../../linalg/svd/index.html)
SVD, SVD,
} }
impl Default for RidgeRegressionSolverName {
fn default() -> Self {
RidgeRegressionSolverName::Cholesky
}
}
/// Ridge Regression parameters /// Ridge Regression parameters
#[cfg_attr(feature = "serde", derive(Serialize, Deserialize))] #[cfg_attr(feature = "serde", derive(Serialize, Deserialize))]
#[derive(Debug, Clone)] #[derive(Debug, Clone)]
@@ -384,10 +379,7 @@ impl<
for (i, col_std_i) in col_std.iter().enumerate() { for (i, col_std_i) in col_std.iter().enumerate() {
if (*col_std_i - TX::zero()).abs() < TX::epsilon() { if (*col_std_i - TX::zero()).abs() < TX::epsilon() {
return Err(Failed::fit(&format!( return Err(Failed::fit(&format!("Cannot rescale constant column {i}")));
"Cannot rescale constant column {}",
i
)));
} }
} }
+3 -3
View File
@@ -98,8 +98,8 @@ mod tests {
let mut scores = HCVScore::new(); let mut scores = HCVScore::new();
scores.compute(&v1, &v2); scores.compute(&v1, &v2);
assert!((0.2548 - scores.homogeneity.unwrap() as f64).abs() < 1e-4); assert!((0.2548 - scores.homogeneity.unwrap()).abs() < 1e-4);
assert!((0.5440 - scores.completeness.unwrap() as f64).abs() < 1e-4); assert!((0.5440 - scores.completeness.unwrap()).abs() < 1e-4);
assert!((0.3471 - scores.v_measure.unwrap() as f64).abs() < 1e-4); assert!((0.3471 - scores.v_measure.unwrap()).abs() < 1e-4);
} }
} }
+1 -1
View File
@@ -125,7 +125,7 @@ mod tests {
fn entropy_test() { fn entropy_test() {
let v1 = vec![0, 0, 1, 1, 2, 0, 4]; let v1 = vec![0, 0, 1, 1, 2, 0, 4];
assert!((1.2770 - entropy(&v1).unwrap() as f64).abs() < 1e-4); assert!((1.2770 - entropy(&v1).unwrap()).abs() < 1e-4);
} }
#[cfg_attr( #[cfg_attr(
+2 -2
View File
@@ -95,8 +95,8 @@ mod tests {
let score1: f64 = F1::new_with(beta).get_score(&y_true, &y_pred); let score1: f64 = F1::new_with(beta).get_score(&y_true, &y_pred);
let score2: f64 = F1::new_with(beta).get_score(&y_true, &y_true); let score2: f64 = F1::new_with(beta).get_score(&y_true, &y_true);
println!("{:?}", score1); println!("{score1:?}");
println!("{:?}", score2); println!("{score2:?}");
assert!((score1 - 0.57142857).abs() < 1e-8); assert!((score1 - 0.57142857).abs() < 1e-8);
assert!((score2 - 1.0).abs() < 1e-8); assert!((score2 - 1.0).abs() < 1e-8);
+6 -10
View File
@@ -213,17 +213,17 @@ mod tests {
for t in &test_masks[0][0..11] { for t in &test_masks[0][0..11] {
// TODO: this can be prob done better // TODO: this can be prob done better
assert_eq!(*t, true) assert!(*t)
} }
for t in &test_masks[0][11..22] { for t in &test_masks[0][11..22] {
assert_eq!(*t, false) assert!(!*t)
} }
for t in &test_masks[1][0..11] { for t in &test_masks[1][0..11] {
assert_eq!(*t, false) assert!(!*t)
} }
for t in &test_masks[1][11..22] { for t in &test_masks[1][11..22] {
assert_eq!(*t, true) assert!(*t)
} }
} }
@@ -283,9 +283,7 @@ mod tests {
(vec![0, 1, 2, 3, 7, 8, 9], vec![4, 5, 6]), (vec![0, 1, 2, 3, 7, 8, 9], vec![4, 5, 6]),
(vec![0, 1, 2, 3, 4, 5, 6], vec![7, 8, 9]), (vec![0, 1, 2, 3, 4, 5, 6], vec![7, 8, 9]),
]; ];
for ((train, test), (expected_train, expected_test)) in for ((train, test), (expected_train, expected_test)) in k.split(&x).zip(expected) {
k.split(&x).into_iter().zip(expected)
{
assert_eq!(test, expected_test); assert_eq!(test, expected_test);
assert_eq!(train, expected_train); assert_eq!(train, expected_train);
} }
@@ -307,9 +305,7 @@ mod tests {
(vec![0, 1, 2, 3, 7, 8, 9], vec![4, 5, 6]), (vec![0, 1, 2, 3, 7, 8, 9], vec![4, 5, 6]),
(vec![0, 1, 2, 3, 4, 5, 6], vec![7, 8, 9]), (vec![0, 1, 2, 3, 4, 5, 6], vec![7, 8, 9]),
]; ];
for ((train, test), (expected_train, expected_test)) in for ((train, test), (expected_train, expected_test)) in k.split(&x).zip(expected) {
k.split(&x).into_iter().zip(expected)
{
assert_eq!(test.len(), expected_test.len()); assert_eq!(test.len(), expected_test.len());
assert_eq!(train.len(), expected_train.len()); assert_eq!(train.len(), expected_train.len());
} }
+2 -2
View File
@@ -169,7 +169,7 @@ pub fn train_test_split<
let n_test = ((n as f32) * test_size) as usize; let n_test = ((n as f32) * test_size) as usize;
if n_test < 1 { if n_test < 1 {
panic!("number of sample is too small {}", n); panic!("number of sample is too small {n}");
} }
let mut indices: Vec<usize> = (0..n).collect(); let mut indices: Vec<usize> = (0..n).collect();
@@ -553,6 +553,6 @@ mod tests {
&accuracy, &accuracy,
) )
.unwrap(); .unwrap();
println!("{:?}", results); println!("{results:?}");
} }
} }
+4 -8
View File
@@ -271,21 +271,18 @@ impl<TY: Number + Ord + Unsigned> BernoulliNBDistribution<TY> {
let y_samples = y.shape(); let y_samples = y.shape();
if y_samples != n_samples { if y_samples != n_samples {
return Err(Failed::fit(&format!( return Err(Failed::fit(&format!(
"Size of x should equal size of y; |x|=[{}], |y|=[{}]", "Size of x should equal size of y; |x|=[{n_samples}], |y|=[{y_samples}]"
n_samples, y_samples
))); )));
} }
if n_samples == 0 { if n_samples == 0 {
return Err(Failed::fit(&format!( return Err(Failed::fit(&format!(
"Size of x and y should greater than 0; |x|=[{}]", "Size of x and y should greater than 0; |x|=[{n_samples}]"
n_samples
))); )));
} }
if alpha < 0f64 { if alpha < 0f64 {
return Err(Failed::fit(&format!( return Err(Failed::fit(&format!(
"Alpha should be greater than 0; |alpha|=[{}]", "Alpha should be greater than 0; |alpha|=[{alpha}]"
alpha
))); )));
} }
@@ -318,8 +315,7 @@ impl<TY: Number + Ord + Unsigned> BernoulliNBDistribution<TY> {
feature_in_class_counter[class_index][idx] += feature_in_class_counter[class_index][idx] +=
row_i.to_usize().ok_or_else(|| { row_i.to_usize().ok_or_else(|| {
Failed::fit(&format!( Failed::fit(&format!(
"Elements of the matrix should be 1.0 or 0.0 |found|=[{}]", "Elements of the matrix should be 1.0 or 0.0 |found|=[{row_i}]"
row_i
)) ))
})?; })?;
} }
+4 -9
View File
@@ -158,8 +158,7 @@ impl<T: Number + Unsigned> CategoricalNBDistribution<T> {
pub fn fit<X: Array2<T>, Y: Array1<T>>(x: &X, y: &Y, alpha: f64) -> Result<Self, Failed> { pub fn fit<X: Array2<T>, Y: Array1<T>>(x: &X, y: &Y, alpha: f64) -> Result<Self, Failed> {
if alpha < 0f64 { if alpha < 0f64 {
return Err(Failed::fit(&format!( return Err(Failed::fit(&format!(
"alpha should be >= 0, alpha=[{}]", "alpha should be >= 0, alpha=[{alpha}]"
alpha
))); )));
} }
@@ -167,15 +166,13 @@ impl<T: Number + Unsigned> CategoricalNBDistribution<T> {
let y_samples = y.shape(); let y_samples = y.shape();
if y_samples != n_samples { if y_samples != n_samples {
return Err(Failed::fit(&format!( return Err(Failed::fit(&format!(
"Size of x should equal size of y; |x|=[{}], |y|=[{}]", "Size of x should equal size of y; |x|=[{n_samples}], |y|=[{y_samples}]"
n_samples, y_samples
))); )));
} }
if n_samples == 0 { if n_samples == 0 {
return Err(Failed::fit(&format!( return Err(Failed::fit(&format!(
"Size of x and y should greater than 0; |x|=[{}]", "Size of x and y should greater than 0; |x|=[{n_samples}]"
n_samples
))); )));
} }
let y: Vec<usize> = y.iterator(0).map(|y_i| y_i.to_usize().unwrap()).collect(); let y: Vec<usize> = y.iterator(0).map(|y_i| y_i.to_usize().unwrap()).collect();
@@ -202,8 +199,7 @@ impl<T: Number + Unsigned> CategoricalNBDistribution<T> {
.max() .max()
.ok_or_else(|| { .ok_or_else(|| {
Failed::fit(&format!( Failed::fit(&format!(
"Failed to get the categories for feature = {}", "Failed to get the categories for feature = {feature}"
feature
)) ))
})?; })?;
n_categories.push(feature_max + 1); n_categories.push(feature_max + 1);
@@ -429,7 +425,6 @@ mod tests {
fn search_parameters() { fn search_parameters() {
let parameters = CategoricalNBSearchParameters { let parameters = CategoricalNBSearchParameters {
alpha: vec![1., 2.], alpha: vec![1., 2.],
..Default::default()
}; };
let mut iter = parameters.into_iter(); let mut iter = parameters.into_iter();
let next = iter.next().unwrap(); let next = iter.next().unwrap();
+2 -5
View File
@@ -185,15 +185,13 @@ impl<TY: Number + Ord + Unsigned> GaussianNBDistribution<TY> {
let y_samples = y.shape(); let y_samples = y.shape();
if y_samples != n_samples { if y_samples != n_samples {
return Err(Failed::fit(&format!( return Err(Failed::fit(&format!(
"Size of x should equal size of y; |x|=[{}], |y|=[{}]", "Size of x should equal size of y; |x|=[{n_samples}], |y|=[{y_samples}]"
n_samples, y_samples
))); )));
} }
if n_samples == 0 { if n_samples == 0 {
return Err(Failed::fit(&format!( return Err(Failed::fit(&format!(
"Size of x and y should greater than 0; |x|=[{}]", "Size of x and y should greater than 0; |x|=[{n_samples}]"
n_samples
))); )));
} }
let (class_labels, indices) = y.unique_with_indices(); let (class_labels, indices) = y.unique_with_indices();
@@ -375,7 +373,6 @@ mod tests {
fn search_parameters() { fn search_parameters() {
let parameters = GaussianNBSearchParameters { let parameters = GaussianNBSearchParameters {
priors: vec![Some(vec![1.]), Some(vec![2.])], priors: vec![Some(vec![1.]), Some(vec![2.])],
..Default::default()
}; };
let mut iter = parameters.into_iter(); let mut iter = parameters.into_iter();
let next = iter.next().unwrap(); let next = iter.next().unwrap();
+4 -8
View File
@@ -220,21 +220,18 @@ impl<TY: Number + Ord + Unsigned> MultinomialNBDistribution<TY> {
let y_samples = y.shape(); let y_samples = y.shape();
if y_samples != n_samples { if y_samples != n_samples {
return Err(Failed::fit(&format!( return Err(Failed::fit(&format!(
"Size of x should equal size of y; |x|=[{}], |y|=[{}]", "Size of x should equal size of y; |x|=[{n_samples}], |y|=[{y_samples}]"
n_samples, y_samples
))); )));
} }
if n_samples == 0 { if n_samples == 0 {
return Err(Failed::fit(&format!( return Err(Failed::fit(&format!(
"Size of x and y should greater than 0; |x|=[{}]", "Size of x and y should greater than 0; |x|=[{n_samples}]"
n_samples
))); )));
} }
if alpha < 0f64 { if alpha < 0f64 {
return Err(Failed::fit(&format!( return Err(Failed::fit(&format!(
"Alpha should be greater than 0; |alpha|=[{}]", "Alpha should be greater than 0; |alpha|=[{alpha}]"
alpha
))); )));
} }
@@ -266,8 +263,7 @@ impl<TY: Number + Ord + Unsigned> MultinomialNBDistribution<TY> {
feature_in_class_counter[class_index][idx] += feature_in_class_counter[class_index][idx] +=
row_i.to_usize().ok_or_else(|| { row_i.to_usize().ok_or_else(|| {
Failed::fit(&format!( Failed::fit(&format!(
"Elements of the matrix should be convertible to usize |found|=[{}]", "Elements of the matrix should be convertible to usize |found|=[{row_i}]"
row_i
)) ))
})?; })?;
} }
+1 -2
View File
@@ -236,8 +236,7 @@ impl<TX: Number, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>, D: Distance<Vec
if x_n != y_n { if x_n != y_n {
return Err(Failed::fit(&format!( return Err(Failed::fit(&format!(
"Size of x should equal size of y; |x|=[{}], |y|=[{}]", "Size of x should equal size of y; |x|=[{x_n}], |y|=[{y_n}]"
x_n, y_n
))); )));
} }
+1 -2
View File
@@ -224,8 +224,7 @@ impl<TX: Number, TY: Number, X: Array2<TX>, Y: Array1<TY>, D: Distance<Vec<TX>>>
if x_n != y_n { if x_n != y_n {
return Err(Failed::fit(&format!( return Err(Failed::fit(&format!(
"Size of x should equal size of y; |x|=[{}], |y|=[{}]", "Size of x should equal size of y; |x|=[{x_n}], |y|=[{y_n}]"
x_n, y_n
))); )));
} }
+2 -7
View File
@@ -49,20 +49,15 @@ pub type KNNAlgorithmName = crate::algorithm::neighbour::KNNAlgorithmName;
/// Weight function that is used to determine estimated value. /// Weight function that is used to determine estimated value.
#[cfg_attr(feature = "serde", derive(Serialize, Deserialize))] #[cfg_attr(feature = "serde", derive(Serialize, Deserialize))]
#[derive(Debug, Clone)] #[derive(Debug, Clone, Default)]
pub enum KNNWeightFunction { pub enum KNNWeightFunction {
/// All k nearest points are weighted equally /// All k nearest points are weighted equally
#[default]
Uniform, Uniform,
/// k nearest points are weighted by the inverse of their distance. Closer neighbors will have a greater influence than neighbors which are further away. /// k nearest points are weighted by the inverse of their distance. Closer neighbors will have a greater influence than neighbors which are further away.
Distance, Distance,
} }
impl Default for KNNWeightFunction {
fn default() -> Self {
KNNWeightFunction::Uniform
}
}
impl KNNWeightFunction { impl KNNWeightFunction {
fn calc_weights(&self, distances: Vec<f64>) -> std::vec::Vec<f64> { fn calc_weights(&self, distances: Vec<f64>) -> std::vec::Vec<f64> {
match *self { match *self {
+26 -3
View File
@@ -2,9 +2,13 @@
//! Most algorithms in `smartcore` rely on basic linear algebra operations like dot product, matrix decomposition and other subroutines that are defined for a set of real numbers, . //! Most algorithms in `smartcore` rely on basic linear algebra operations like dot product, matrix decomposition and other subroutines that are defined for a set of real numbers, .
//! This module defines real number and some useful functions that are used in [Linear Algebra](../../linalg/index.html) module. //! This module defines real number and some useful functions that are used in [Linear Algebra](../../linalg/index.html) module.
use rand::rngs::SmallRng;
use rand::{Rng, SeedableRng};
use num_traits::Float; use num_traits::Float;
use crate::numbers::basenum::Number; use crate::numbers::basenum::Number;
use crate::rand_custom::get_rng_impl;
/// Defines real number /// Defines real number
/// <script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.0/MathJax.js?config=TeX-AMS_CHTML"></script> /// <script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.0/MathJax.js?config=TeX-AMS_CHTML"></script>
@@ -63,8 +67,12 @@ impl RealNumber for f64 {
} }
fn rand() -> f64 { fn rand() -> f64 {
// TODO: to be implemented, see issue smartcore#214 let mut small_rng = get_rng_impl(None);
1.0
let mut rngs: Vec<SmallRng> = (0..3)
.map(|_| SmallRng::from_rng(&mut small_rng).unwrap())
.collect();
rngs[0].gen::<f64>()
} }
fn two() -> Self { fn two() -> Self {
@@ -108,7 +116,12 @@ impl RealNumber for f32 {
} }
fn rand() -> f32 { fn rand() -> f32 {
1.0 let mut small_rng = get_rng_impl(None);
let mut rngs: Vec<SmallRng> = (0..3)
.map(|_| SmallRng::from_rng(&mut small_rng).unwrap())
.collect();
rngs[0].gen::<f32>()
} }
fn two() -> Self { fn two() -> Self {
@@ -149,4 +162,14 @@ mod tests {
fn f64_from_string() { fn f64_from_string() {
assert_eq!(f64::from_str("1.111111111").unwrap(), 1.111111111) assert_eq!(f64::from_str("1.111111111").unwrap(), 1.111111111)
} }
#[test]
fn f64_rand() {
f64::rand();
}
#[test]
fn f32_rand() {
f32::rand();
}
} }
@@ -113,12 +113,13 @@ mod tests {
g[1] = 200. * (x[1] - x[0].powf(2.)); g[1] = 200. * (x[1] - x[0].powf(2.));
}; };
let mut ls: Backtracking<f64> = Default::default(); let ls: Backtracking<f64> = Backtracking::<f64> {
ls.order = FunctionOrder::THIRD; order: FunctionOrder::THIRD,
..Default::default()
};
let optimizer: GradientDescent = Default::default(); let optimizer: GradientDescent = Default::default();
let result = optimizer.optimize(&f, &df, &x0, &ls); let result = optimizer.optimize(&f, &df, &x0, &ls);
println!("{:?}", result);
assert!((result.f_x - 0.0).abs() < 1e-5); assert!((result.f_x - 0.0).abs() < 1e-5);
assert!((result.x[0] - 1.0).abs() < 1e-2); assert!((result.x[0] - 1.0).abs() < 1e-2);
+6 -4
View File
@@ -196,9 +196,9 @@ impl LBFGS {
} }
/// ///
fn update_hessian<'a, T: FloatNumber, X: Array1<T>>( fn update_hessian<T: FloatNumber, X: Array1<T>>(
&self, &self,
_: &'a DF<'_, X>, _: &DF<'_, X>,
state: &mut LBFGSState<T, X>, state: &mut LBFGSState<T, X>,
) { ) {
state.dg = state.x_df.sub(&state.x_df_prev); state.dg = state.x_df.sub(&state.x_df_prev);
@@ -291,8 +291,10 @@ mod tests {
g[0] = -2. * (1. - x[0]) - 400. * (x[1] - x[0].powf(2.)) * x[0]; g[0] = -2. * (1. - x[0]) - 400. * (x[1] - x[0].powf(2.)) * x[0];
g[1] = 200. * (x[1] - x[0].powf(2.)); g[1] = 200. * (x[1] - x[0].powf(2.));
}; };
let mut ls: Backtracking<f64> = Default::default(); let ls: Backtracking<f64> = Backtracking::<f64> {
ls.order = FunctionOrder::THIRD; order: FunctionOrder::THIRD,
..Default::default()
};
let optimizer: LBFGS = Default::default(); let optimizer: LBFGS = Default::default();
let result = optimizer.optimize(&f, &df, &x0, &ls); let result = optimizer.optimize(&f, &df, &x0, &ls);
+4 -9
View File
@@ -132,8 +132,7 @@ impl OneHotEncoder {
data.copy_col_as_vec(idx, &mut col_buf); data.copy_col_as_vec(idx, &mut col_buf);
if !validate_col_is_categorical(&col_buf) { if !validate_col_is_categorical(&col_buf) {
let msg = format!( let msg = format!(
"Column {} of data matrix containts non categorizable (integer) values", "Column {idx} of data matrix containts non categorizable (integer) values"
idx
); );
return Err(Failed::fit(&msg[..])); return Err(Failed::fit(&msg[..]));
} }
@@ -182,7 +181,7 @@ impl OneHotEncoder {
match oh_vec { match oh_vec {
None => { None => {
// Since we support T types, bad value in a series causes in to be invalid // Since we support T types, bad value in a series causes in to be invalid
let msg = format!("At least one value in column {} doesn't conform to category definition", old_cidx); let msg = format!("At least one value in column {old_cidx} doesn't conform to category definition");
return Err(Failed::transform(&msg[..])); return Err(Failed::transform(&msg[..]));
} }
Some(v) => { Some(v) => {
@@ -338,11 +337,7 @@ mod tests {
]); ]);
let params = OneHotEncoderParams::from_cat_idx(&[1]); let params = OneHotEncoderParams::from_cat_idx(&[1]);
match OneHotEncoder::fit(&m, params) { let result = OneHotEncoder::fit(&m, params);
Err(_) => { assert!(result.is_err());
assert!(true);
}
_ => assert!(false),
}
} }
} }
+1 -1
View File
@@ -294,7 +294,7 @@ mod tests {
&[0.5708488802, 0.1846414616, 0.9590802982, 0.5591871046], &[0.5708488802, 0.1846414616, 0.9590802982, 0.5591871046],
&[0.8387612750, 0.5754861361, 0.5537109852, 0.1077646442], &[0.8387612750, 0.5754861361, 0.5537109852, 0.1077646442],
])); ]));
println!("{}", transformed_values); println!("{transformed_values}");
assert!(transformed_values.approximate_eq( assert!(transformed_values.approximate_eq(
&DenseMatrix::from_2d_array(&[ &DenseMatrix::from_2d_array(&[
&[-1.1154020653, -0.4031985330, 0.9284605204, -0.4271473866], &[-1.1154020653, -0.4031985330, 0.9284605204, -0.4271473866],
+4 -4
View File
@@ -206,7 +206,7 @@ mod tests {
#[test] #[test]
fn from_categories() { fn from_categories() {
let fake_categories: Vec<usize> = vec![1, 2, 3, 4, 5, 3, 5, 3, 1, 2, 4]; let fake_categories: Vec<usize> = vec![1, 2, 3, 4, 5, 3, 5, 3, 1, 2, 4];
let it = fake_categories.iter().map(|&a| a); let it = fake_categories.iter().copied();
let enc = CategoryMapper::<usize>::fit_to_iter(it); let enc = CategoryMapper::<usize>::fit_to_iter(it);
let oh_vec: Vec<f64> = match enc.get_one_hot(&1) { let oh_vec: Vec<f64> = match enc.get_one_hot(&1) {
None => panic!("Wrong categories"), None => panic!("Wrong categories"),
@@ -218,8 +218,8 @@ mod tests {
fn build_fake_str_enc<'a>() -> CategoryMapper<&'a str> { fn build_fake_str_enc<'a>() -> CategoryMapper<&'a str> {
let fake_category_pos = vec!["background", "dog", "cat"]; let fake_category_pos = vec!["background", "dog", "cat"];
let enc = CategoryMapper::<&str>::from_positional_category_vec(fake_category_pos);
enc CategoryMapper::<&str>::from_positional_category_vec(fake_category_pos)
} }
#[cfg_attr( #[cfg_attr(
all(target_arch = "wasm32", not(target_os = "wasi")), all(target_arch = "wasm32", not(target_os = "wasi")),
@@ -275,7 +275,7 @@ mod tests {
let lab = enc.invert_one_hot(res).unwrap(); let lab = enc.invert_one_hot(res).unwrap();
assert_eq!(lab, "dog"); assert_eq!(lab, "dog");
if let Err(e) = enc.invert_one_hot(vec![0.0, 0.0, 0.0]) { if let Err(e) = enc.invert_one_hot(vec![0.0, 0.0, 0.0]) {
let pos_entries = format!("Expected a single positive entry, 0 entires found"); let pos_entries = "Expected a single positive entry, 0 entires found".to_string();
assert_eq!(e, Failed::transform(&pos_entries[..])); assert_eq!(e, Failed::transform(&pos_entries[..]));
}; };
} }
+5 -11
View File
@@ -83,7 +83,7 @@ where
Matrix: Array2<T>, Matrix: Array2<T>,
{ {
let csv_text = read_string_from_source(source)?; let csv_text = read_string_from_source(source)?;
let rows: Vec<Vec<T>> = extract_row_vectors_from_csv_text::<T, RowVector, Matrix>( let rows: Vec<Vec<T>> = extract_row_vectors_from_csv_text(
&csv_text, &csv_text,
&definition, &definition,
detect_row_format(&csv_text, &definition)?, detect_row_format(&csv_text, &definition)?,
@@ -103,12 +103,7 @@ where
/// Given a string containing the contents of a csv file, extract its value /// Given a string containing the contents of a csv file, extract its value
/// into row-vectors. /// into row-vectors.
fn extract_row_vectors_from_csv_text< fn extract_row_vectors_from_csv_text<'a, T: Number + RealNumber + std::str::FromStr>(
'a,
T: Number + RealNumber + std::str::FromStr,
RowVector: Array1<T>,
Matrix: Array2<T>,
>(
csv_text: &'a str, csv_text: &'a str,
definition: &'a CSVDefinition<'_>, definition: &'a CSVDefinition<'_>,
row_format: CSVRowFormat<'_>, row_format: CSVRowFormat<'_>,
@@ -167,7 +162,7 @@ where
} }
/// Ensure that a string containing a csv row conforms to a specified row format. /// Ensure that a string containing a csv row conforms to a specified row format.
fn validate_csv_row<'a>(row: &'a str, row_format: &CSVRowFormat<'_>) -> Result<(), ReadingError> { fn validate_csv_row(row: &str, row_format: &CSVRowFormat<'_>) -> Result<(), ReadingError> {
let actual_number_of_fields = row.split(row_format.field_seperator).count(); let actual_number_of_fields = row.split(row_format.field_seperator).count();
if row_format.n_fields == actual_number_of_fields { if row_format.n_fields == actual_number_of_fields {
Ok(()) Ok(())
@@ -208,7 +203,7 @@ where
match value_string.parse::<T>().ok() { match value_string.parse::<T>().ok() {
Some(value) => Ok(value), Some(value) => Ok(value),
None => Err(ReadingError::InvalidField { None => Err(ReadingError::InvalidField {
msg: format!("Value '{}' could not be read.", value_string,), msg: format!("Value '{value_string}' could not be read.",),
}), }),
} }
} }
@@ -305,12 +300,11 @@ mod tests {
} }
mod extract_row_vectors_from_csv_text { mod extract_row_vectors_from_csv_text {
use super::super::{extract_row_vectors_from_csv_text, CSVDefinition, CSVRowFormat}; use super::super::{extract_row_vectors_from_csv_text, CSVDefinition, CSVRowFormat};
use crate::linalg::basic::matrix::DenseMatrix;
#[test] #[test]
fn read_default_csv() { fn read_default_csv() {
assert_eq!( assert_eq!(
extract_row_vectors_from_csv_text::<f64, Vec<_>, DenseMatrix<_>>( extract_row_vectors_from_csv_text::<f64>(
"column 1, column 2, column3\n1.0,2.0,3.0\n4.0,5.0,6.0", "column 1, column 2, column3\n1.0,2.0,3.0\n4.0,5.0,6.0",
&CSVDefinition::default(), &CSVDefinition::default(),
CSVRowFormat { CSVRowFormat {
+57 -74
View File
@@ -322,19 +322,26 @@ impl<'a, TX: Number + RealNumber, TY: Number + Ord, X: Array2<TX> + 'a, Y: Array
let (n, _) = x.shape(); let (n, _) = x.shape();
let mut y_hat: Vec<TX> = Array1::zeros(n); let mut y_hat: Vec<TX> = Array1::zeros(n);
let mut row = Vec::with_capacity(n);
for i in 0..n { for i in 0..n {
let row_pred: TX = row.clear();
self.predict_for_row(Vec::from_iterator(x.get_row(i).iterator(0).copied(), n)); row.extend(x.get_row(i).iterator(0).copied());
let row_pred: TX = self.predict_for_row(&row);
y_hat.set(i, row_pred); y_hat.set(i, row_pred);
} }
Ok(y_hat) Ok(y_hat)
} }
fn predict_for_row(&self, x: Vec<TX>) -> TX { fn predict_for_row(&self, x: &[TX]) -> TX {
let mut f = self.b.unwrap(); let mut f = self.b.unwrap();
let xi: Vec<_> = x.iter().map(|e| e.to_f64().unwrap()).collect();
for i in 0..self.instances.as_ref().unwrap().len() { for i in 0..self.instances.as_ref().unwrap().len() {
let xj: Vec<_> = self.instances.as_ref().unwrap()[i]
.iter()
.map(|e| e.to_f64().unwrap())
.collect();
f += self.w.as_ref().unwrap()[i] f += self.w.as_ref().unwrap()[i]
* TX::from( * TX::from(
self.parameters self.parameters
@@ -343,13 +350,7 @@ impl<'a, TX: Number + RealNumber, TY: Number + Ord, X: Array2<TX> + 'a, Y: Array
.kernel .kernel
.as_ref() .as_ref()
.unwrap() .unwrap()
.apply( .apply(&xi, &xj)
&x.iter().map(|e| e.to_f64().unwrap()).collect(),
&self.instances.as_ref().unwrap()[i]
.iter()
.map(|e| e.to_f64().unwrap())
.collect(),
)
.unwrap(), .unwrap(),
) )
.unwrap(); .unwrap();
@@ -472,14 +473,12 @@ impl<'a, TX: Number + RealNumber, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>
let tol = self.parameters.tol; let tol = self.parameters.tol;
let good_enough = TX::from_i32(1000).unwrap(); let good_enough = TX::from_i32(1000).unwrap();
let mut x = Vec::with_capacity(n);
for _ in 0..self.parameters.epoch { for _ in 0..self.parameters.epoch {
for i in self.permutate(n) { for i in self.permutate(n) {
self.process( x.clear();
i, x.extend(self.x.get_row(i).iterator(0).take(n).copied());
Vec::from_iterator(self.x.get_row(i).iterator(0).copied(), n), self.process(i, &x, *self.y.get(i), &mut cache);
*self.y.get(i),
&mut cache,
);
loop { loop {
self.reprocess(tol, &mut cache); self.reprocess(tol, &mut cache);
self.find_min_max_gradient(); self.find_min_max_gradient();
@@ -511,24 +510,17 @@ impl<'a, TX: Number + RealNumber, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>
let mut cp = 0; let mut cp = 0;
let mut cn = 0; let mut cn = 0;
let mut x = Vec::with_capacity(n);
for i in self.permutate(n) { for i in self.permutate(n) {
x.clear();
x.extend(self.x.get_row(i).iterator(0).take(n).copied());
if *self.y.get(i) == TY::one() && cp < few { if *self.y.get(i) == TY::one() && cp < few {
if self.process( if self.process(i, &x, *self.y.get(i), cache) {
i,
Vec::from_iterator(self.x.get_row(i).iterator(0).copied(), n),
*self.y.get(i),
cache,
) {
cp += 1; cp += 1;
} }
} else if *self.y.get(i) == TY::from(-1).unwrap() } else if *self.y.get(i) == TY::from(-1).unwrap()
&& cn < few && cn < few
&& self.process( && self.process(i, &x, *self.y.get(i), cache)
i,
Vec::from_iterator(self.x.get_row(i).iterator(0).copied(), n),
*self.y.get(i),
cache,
)
{ {
cn += 1; cn += 1;
} }
@@ -539,7 +531,7 @@ impl<'a, TX: Number + RealNumber, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>
} }
} }
fn process(&mut self, i: usize, x: Vec<TX>, y: TY, cache: &mut Cache<TX, TY, X, Y>) -> bool { fn process(&mut self, i: usize, x: &[TX], y: TY, cache: &mut Cache<TX, TY, X, Y>) -> bool {
for j in 0..self.sv.len() { for j in 0..self.sv.len() {
if self.sv[j].index == i { if self.sv[j].index == i {
return true; return true;
@@ -551,15 +543,14 @@ impl<'a, TX: Number + RealNumber, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>
let mut cache_values: Vec<((usize, usize), TX)> = Vec::new(); let mut cache_values: Vec<((usize, usize), TX)> = Vec::new();
for v in self.sv.iter() { for v in self.sv.iter() {
let xi: Vec<_> = v.x.iter().map(|e| e.to_f64().unwrap()).collect();
let xj: Vec<_> = x.iter().map(|e| e.to_f64().unwrap()).collect();
let k = self let k = self
.parameters .parameters
.kernel .kernel
.as_ref() .as_ref()
.unwrap() .unwrap()
.apply( .apply(&xi, &xj)
&v.x.iter().map(|e| e.to_f64().unwrap()).collect(),
&x.iter().map(|e| e.to_f64().unwrap()).collect(),
)
.unwrap(); .unwrap();
cache_values.push(((i, v.index), TX::from(k).unwrap())); cache_values.push(((i, v.index), TX::from(k).unwrap()));
g -= v.alpha * k; g -= v.alpha * k;
@@ -578,7 +569,7 @@ impl<'a, TX: Number + RealNumber, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>
cache.insert(v.0, v.1.to_f64().unwrap()); cache.insert(v.0, v.1.to_f64().unwrap());
} }
let x_f64 = x.iter().map(|e| e.to_f64().unwrap()).collect(); let x_f64: Vec<_> = x.iter().map(|e| e.to_f64().unwrap()).collect();
let k_v = self let k_v = self
.parameters .parameters
.kernel .kernel
@@ -701,8 +692,10 @@ impl<'a, TX: Number + RealNumber, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>
let km = sv1.k; let km = sv1.k;
let gm = sv1.grad; let gm = sv1.grad;
let mut best = 0f64; let mut best = 0f64;
let xi: Vec<_> = sv1.x.iter().map(|e| e.to_f64().unwrap()).collect();
for i in 0..self.sv.len() { for i in 0..self.sv.len() {
let v = &self.sv[i]; let v = &self.sv[i];
let xj: Vec<_> = v.x.iter().map(|e| e.to_f64().unwrap()).collect();
let z = v.grad - gm; let z = v.grad - gm;
let k = cache.get( let k = cache.get(
sv1, sv1,
@@ -711,10 +704,7 @@ impl<'a, TX: Number + RealNumber, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>
.kernel .kernel
.as_ref() .as_ref()
.unwrap() .unwrap()
.apply( .apply(&xi, &xj)
&sv1.x.iter().map(|e| e.to_f64().unwrap()).collect(),
&v.x.iter().map(|e| e.to_f64().unwrap()).collect(),
)
.unwrap(), .unwrap(),
); );
let mut curv = km + v.k - 2f64 * k; let mut curv = km + v.k - 2f64 * k;
@@ -732,6 +722,12 @@ impl<'a, TX: Number + RealNumber, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>
} }
} }
let xi: Vec<_> = self.sv[idx_1]
.x
.iter()
.map(|e| e.to_f64().unwrap())
.collect::<Vec<_>>();
idx_2.map(|idx_2| { idx_2.map(|idx_2| {
( (
idx_1, idx_1,
@@ -742,16 +738,12 @@ impl<'a, TX: Number + RealNumber, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>
.as_ref() .as_ref()
.unwrap() .unwrap()
.apply( .apply(
&self.sv[idx_1] &xi,
.x
.iter()
.map(|e| e.to_f64().unwrap())
.collect(),
&self.sv[idx_2] &self.sv[idx_2]
.x .x
.iter() .iter()
.map(|e| e.to_f64().unwrap()) .map(|e| e.to_f64().unwrap())
.collect(), .collect::<Vec<_>>(),
) )
.unwrap() .unwrap()
}), }),
@@ -765,8 +757,11 @@ impl<'a, TX: Number + RealNumber, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>
let km = sv2.k; let km = sv2.k;
let gm = sv2.grad; let gm = sv2.grad;
let mut best = 0f64; let mut best = 0f64;
let xi: Vec<_> = sv2.x.iter().map(|e| e.to_f64().unwrap()).collect();
for i in 0..self.sv.len() { for i in 0..self.sv.len() {
let v = &self.sv[i]; let v = &self.sv[i];
let xj: Vec<_> = v.x.iter().map(|e| e.to_f64().unwrap()).collect();
let z = gm - v.grad; let z = gm - v.grad;
let k = cache.get( let k = cache.get(
sv2, sv2,
@@ -775,10 +770,7 @@ impl<'a, TX: Number + RealNumber, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>
.kernel .kernel
.as_ref() .as_ref()
.unwrap() .unwrap()
.apply( .apply(&xi, &xj)
&sv2.x.iter().map(|e| e.to_f64().unwrap()).collect(),
&v.x.iter().map(|e| e.to_f64().unwrap()).collect(),
)
.unwrap(), .unwrap(),
); );
let mut curv = km + v.k - 2f64 * k; let mut curv = km + v.k - 2f64 * k;
@@ -797,6 +789,12 @@ impl<'a, TX: Number + RealNumber, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>
} }
} }
let xj: Vec<_> = self.sv[idx_2]
.x
.iter()
.map(|e| e.to_f64().unwrap())
.collect();
idx_1.map(|idx_1| { idx_1.map(|idx_1| {
( (
idx_1, idx_1,
@@ -811,12 +809,8 @@ impl<'a, TX: Number + RealNumber, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>
.x .x
.iter() .iter()
.map(|e| e.to_f64().unwrap()) .map(|e| e.to_f64().unwrap())
.collect(), .collect::<Vec<_>>(),
&self.sv[idx_2] &xj,
.x
.iter()
.map(|e| e.to_f64().unwrap())
.collect(),
) )
.unwrap() .unwrap()
}), }),
@@ -835,12 +829,12 @@ impl<'a, TX: Number + RealNumber, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>
.x .x
.iter() .iter()
.map(|e| e.to_f64().unwrap()) .map(|e| e.to_f64().unwrap())
.collect(), .collect::<Vec<_>>(),
&self.sv[idx_2] &self.sv[idx_2]
.x .x
.iter() .iter()
.map(|e| e.to_f64().unwrap()) .map(|e| e.to_f64().unwrap())
.collect(), .collect::<Vec<_>>(),
) )
.unwrap(), .unwrap(),
)), )),
@@ -895,7 +889,10 @@ impl<'a, TX: Number + RealNumber, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>
self.sv[v1].alpha -= step.to_f64().unwrap(); self.sv[v1].alpha -= step.to_f64().unwrap();
self.sv[v2].alpha += step.to_f64().unwrap(); self.sv[v2].alpha += step.to_f64().unwrap();
let xi_v1: Vec<_> = self.sv[v1].x.iter().map(|e| e.to_f64().unwrap()).collect();
let xi_v2: Vec<_> = self.sv[v2].x.iter().map(|e| e.to_f64().unwrap()).collect();
for i in 0..self.sv.len() { for i in 0..self.sv.len() {
let xj: Vec<_> = self.sv[i].x.iter().map(|e| e.to_f64().unwrap()).collect();
let k2 = cache.get( let k2 = cache.get(
&self.sv[v2], &self.sv[v2],
&self.sv[i], &self.sv[i],
@@ -903,10 +900,7 @@ impl<'a, TX: Number + RealNumber, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>
.kernel .kernel
.as_ref() .as_ref()
.unwrap() .unwrap()
.apply( .apply(&xi_v2, &xj)
&self.sv[v2].x.iter().map(|e| e.to_f64().unwrap()).collect(),
&self.sv[i].x.iter().map(|e| e.to_f64().unwrap()).collect(),
)
.unwrap(), .unwrap(),
); );
let k1 = cache.get( let k1 = cache.get(
@@ -916,10 +910,7 @@ impl<'a, TX: Number + RealNumber, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>
.kernel .kernel
.as_ref() .as_ref()
.unwrap() .unwrap()
.apply( .apply(&xi_v1, &xj)
&self.sv[v1].x.iter().map(|e| e.to_f64().unwrap()).collect(),
&self.sv[i].x.iter().map(|e| e.to_f64().unwrap()).collect(),
)
.unwrap(), .unwrap(),
); );
self.sv[i].grad -= step.to_f64().unwrap() * (k2 - k1); self.sv[i].grad -= step.to_f64().unwrap() * (k2 - k1);
@@ -983,11 +974,7 @@ mod tests {
.unwrap(); .unwrap();
let acc = accuracy(&y, &(y_hat.iter().map(|e| e.to_i32().unwrap()).collect())); let acc = accuracy(&y, &(y_hat.iter().map(|e| e.to_i32().unwrap()).collect()));
assert!( assert!(acc >= 0.9, "accuracy ({acc}) is not larger or equal to 0.9");
acc >= 0.9,
"accuracy ({}) is not larger or equal to 0.9",
acc
);
} }
#[cfg_attr( #[cfg_attr(
@@ -1076,11 +1063,7 @@ mod tests {
let acc = accuracy(&y, &(y_hat.iter().map(|e| e.to_i32().unwrap()).collect())); let acc = accuracy(&y, &(y_hat.iter().map(|e| e.to_i32().unwrap()).collect()));
assert!( assert!(acc >= 0.9, "accuracy ({acc}) is not larger or equal to 0.9");
acc >= 0.9,
"accuracy ({}) is not larger or equal to 0.9",
acc
);
} }
#[cfg_attr( #[cfg_attr(
+8 -10
View File
@@ -248,19 +248,20 @@ impl<'a, T: Number + FloatNumber + PartialOrd, X: Array2<T>, Y: Array1<T>> SVR<'
let mut y_hat: Vec<T> = Vec::<T>::zeros(n); let mut y_hat: Vec<T> = Vec::<T>::zeros(n);
let mut x_i = Vec::with_capacity(n);
for i in 0..n { for i in 0..n {
y_hat.set( x_i.clear();
i, x_i.extend(x.get_row(i).iterator(0).copied());
self.predict_for_row(Vec::from_iterator(x.get_row(i).iterator(0).copied(), n)), y_hat.set(i, self.predict_for_row(&x_i));
);
} }
Ok(y_hat) Ok(y_hat)
} }
pub(crate) fn predict_for_row(&self, x: Vec<T>) -> T { pub(crate) fn predict_for_row(&self, x: &[T]) -> T {
let mut f = self.b; let mut f = self.b;
let xi: Vec<_> = x.iter().map(|e| e.to_f64().unwrap()).collect();
for i in 0..self.instances.as_ref().unwrap().len() { for i in 0..self.instances.as_ref().unwrap().len() {
f += self.w.as_ref().unwrap()[i] f += self.w.as_ref().unwrap()[i]
* T::from( * T::from(
@@ -270,10 +271,7 @@ impl<'a, T: Number + FloatNumber + PartialOrd, X: Array2<T>, Y: Array1<T>> SVR<'
.kernel .kernel
.as_ref() .as_ref()
.unwrap() .unwrap()
.apply( .apply(&xi, &self.instances.as_ref().unwrap()[i])
&x.iter().map(|e| e.to_f64().unwrap()).collect(),
&self.instances.as_ref().unwrap()[i],
)
.unwrap(), .unwrap(),
) )
.unwrap() .unwrap()
@@ -662,7 +660,7 @@ mod tests {
.unwrap(); .unwrap();
let t = mean_squared_error(&y_hat, &y); let t = mean_squared_error(&y_hat, &y);
println!("{:?}", t); println!("{t:?}");
assert!(t < 2.5); assert!(t < 2.5);
} }
+22 -15
View File
@@ -137,16 +137,17 @@ impl<TX: Number + PartialOrd, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>>
self.classes.as_ref() self.classes.as_ref()
} }
/// Get depth of tree /// Get depth of tree
fn depth(&self) -> u16 { pub fn depth(&self) -> u16 {
self.depth self.depth
} }
} }
/// The function to measure the quality of a split. /// The function to measure the quality of a split.
#[cfg_attr(feature = "serde", derive(Serialize, Deserialize))] #[cfg_attr(feature = "serde", derive(Serialize, Deserialize))]
#[derive(Debug, Clone)] #[derive(Debug, Clone, Default)]
pub enum SplitCriterion { pub enum SplitCriterion {
/// [Gini index](../decision_tree_classifier/index.html) /// [Gini index](../decision_tree_classifier/index.html)
#[default]
Gini, Gini,
/// [Entropy](../decision_tree_classifier/index.html) /// [Entropy](../decision_tree_classifier/index.html)
Entropy, Entropy,
@@ -154,12 +155,6 @@ pub enum SplitCriterion {
ClassificationError, ClassificationError,
} }
impl Default for SplitCriterion {
fn default() -> Self {
SplitCriterion::Gini
}
}
#[cfg_attr(feature = "serde", derive(Serialize, Deserialize))] #[cfg_attr(feature = "serde", derive(Serialize, Deserialize))]
#[derive(Debug, Clone)] #[derive(Debug, Clone)]
struct Node { struct Node {
@@ -543,6 +538,10 @@ impl<TX: Number + PartialOrd, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>>
parameters: DecisionTreeClassifierParameters, parameters: DecisionTreeClassifierParameters,
) -> Result<DecisionTreeClassifier<TX, TY, X, Y>, Failed> { ) -> Result<DecisionTreeClassifier<TX, TY, X, Y>, Failed> {
let (x_nrows, num_attributes) = x.shape(); let (x_nrows, num_attributes) = x.shape();
if x_nrows != y.shape() {
return Err(Failed::fit("Size of x should equal size of y"));
}
let samples = vec![1; x_nrows]; let samples = vec![1; x_nrows];
DecisionTreeClassifier::fit_weak_learner(x, y, samples, num_attributes, parameters) DecisionTreeClassifier::fit_weak_learner(x, y, samples, num_attributes, parameters)
} }
@@ -560,8 +559,7 @@ impl<TX: Number + PartialOrd, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>>
let k = classes.len(); let k = classes.len();
if k < 2 { if k < 2 {
return Err(Failed::fit(&format!( return Err(Failed::fit(&format!(
"Incorrect number of classes: {}. Should be >= 2.", "Incorrect number of classes: {k}. Should be >= 2."
k
))); )));
} }
@@ -901,15 +899,13 @@ mod tests {
)] )]
#[test] #[test]
fn gini_impurity() { fn gini_impurity() {
assert!((impurity(&SplitCriterion::Gini, &[7, 3], 10) - 0.42).abs() < std::f64::EPSILON);
assert!( assert!(
(impurity(&SplitCriterion::Gini, &vec![7, 3], 10) - 0.42).abs() < std::f64::EPSILON (impurity(&SplitCriterion::Entropy, &[7, 3], 10) - 0.8812908992306927).abs()
);
assert!(
(impurity(&SplitCriterion::Entropy, &vec![7, 3], 10) - 0.8812908992306927).abs()
< std::f64::EPSILON < std::f64::EPSILON
); );
assert!( assert!(
(impurity(&SplitCriterion::ClassificationError, &vec![7, 3], 10) - 0.3).abs() (impurity(&SplitCriterion::ClassificationError, &[7, 3], 10) - 0.3).abs()
< std::f64::EPSILON < std::f64::EPSILON
); );
} }
@@ -971,6 +967,17 @@ mod tests {
); );
} }
#[test]
fn test_random_matrix_with_wrong_rownum() {
let x_rand: DenseMatrix<f64> = DenseMatrix::<f64>::rand(21, 200);
let y: Vec<u32> = vec![0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1];
let fail = DecisionTreeClassifier::fit(&x_rand, &y, Default::default());
assert!(fail.is_err());
}
#[cfg_attr( #[cfg_attr(
all(target_arch = "wasm32", not(target_os = "wasi")), all(target_arch = "wasm32", not(target_os = "wasi")),
wasm_bindgen_test::wasm_bindgen_test wasm_bindgen_test::wasm_bindgen_test
+4 -1
View File
@@ -18,7 +18,6 @@
//! Example: //! Example:
//! //!
//! ``` //! ```
//! use rand::thread_rng;
//! use smartcore::linalg::basic::matrix::DenseMatrix; //! use smartcore::linalg::basic::matrix::DenseMatrix;
//! use smartcore::tree::decision_tree_regressor::*; //! use smartcore::tree::decision_tree_regressor::*;
//! //!
@@ -422,6 +421,10 @@ impl<TX: Number + PartialOrd, TY: Number, X: Array2<TX>, Y: Array1<TY>>
parameters: DecisionTreeRegressorParameters, parameters: DecisionTreeRegressorParameters,
) -> Result<DecisionTreeRegressor<TX, TY, X, Y>, Failed> { ) -> Result<DecisionTreeRegressor<TX, TY, X, Y>, Failed> {
let (x_nrows, num_attributes) = x.shape(); let (x_nrows, num_attributes) = x.shape();
if x_nrows != y.shape() {
return Err(Failed::fit("Size of x should equal size of y"));
}
let samples = vec![1; x_nrows]; let samples = vec![1; x_nrows];
DecisionTreeRegressor::fit_weak_learner(x, y, samples, num_attributes, parameters) DecisionTreeRegressor::fit_weak_learner(x, y, samples, num_attributes, parameters)
} }