Use CategoryMapper to transform an iterator. No more passing iterator to SeriesEncoders

This commit is contained in:
gaxler
2021-02-03 13:42:27 -08:00
parent 374dfeceb9
commit 828df4e338
+33 -34
View File
@@ -1,12 +1,12 @@
//! # One-hot Encoding For [RealNumber](../../math/num/trait.RealNumber.html) Matricies //! # One-hot Encoding For [RealNumber](../../math/num/trait.RealNumber.html) Matricies
//! Transform a data [Matrix](../../linalg/trait.BaseMatrix.html) by replacing all categorical variables with their one-hot equivalents //! Transform a data [Matrix](../../linalg/trait.BaseMatrix.html) by replacing all categorical variables with their one-hot equivalents
//! //!
//! Internally OneHotEncoder treats every categorical column as a series and transforms it using [SeriesOneHotEncoder](../series_encoder/struct.SeriesOneHotEncoder.html) //! Internally OneHotEncoder treats every categorical column as a series and transforms it using [CategoryMapper](../series_encoder/struct.CategoryMapper.html)
//! //!
//! ### Usage Example //! ### Usage Example
//! ``` //! ```
//! use smartcore::linalg::naive::dense_matrix::DenseMatrix; //! use smartcore::linalg::naive::dense_matrix::DenseMatrix;
//! use smartcore::preprocessing::categorical_encoder::{OneHotEnc, OneHotEncoderParams}; //! use smartcore::preprocessing::categorical_encoder::{OneHotEncoder, OneHotEncoderParams};
//! let data = DenseMatrix::from_2d_array(&[ //! let data = DenseMatrix::from_2d_array(&[
//! &[1.5, 1.0, 1.5, 3.0], //! &[1.5, 1.0, 1.5, 3.0],
//! &[1.5, 2.0, 1.5, 4.0], //! &[1.5, 2.0, 1.5, 4.0],
@@ -15,7 +15,7 @@
//! ]); //! ]);
//! let encoder_params = OneHotEncoderParams::from_cat_idx(&[1, 3]); //! let encoder_params = OneHotEncoderParams::from_cat_idx(&[1, 3]);
//! // Infer number of categories from data and return a reusable encoder //! // Infer number of categories from data and return a reusable encoder
//! let encoder = OneHotEnc::fit(&data, encoder_params).unwrap(); //! let encoder = OneHotEncoder::fit(&data, encoder_params).unwrap();
//! // Transform categorical to one-hot encoded (can transform similar) //! // Transform categorical to one-hot encoded (can transform similar)
//! let oh_data = encoder.transform(&data).unwrap(); //! let oh_data = encoder.transform(&data).unwrap();
//! // Produces the following: //! // Produces the following:
@@ -30,7 +30,7 @@ use crate::error::Failed;
use crate::linalg::Matrix; use crate::linalg::Matrix;
use crate::preprocessing::data_traits::{CategoricalFloat, Categorizable}; use crate::preprocessing::data_traits::{CategoricalFloat, Categorizable};
use crate::preprocessing::series_encoder::{SeriesOneHotEncoder, SeriesEncoder}; use crate::preprocessing::series_encoder::CategoryMapper;
/// OneHotEncoder Parameters /// OneHotEncoder Parameters
#[derive(Debug, Clone)] #[derive(Debug, Clone)]
@@ -97,17 +97,18 @@ fn validate_col_is_categorical<T: Categorizable>(data: &[T]) -> bool {
/// Encode Categorical variavbles of data matrix to one-hot /// Encode Categorical variavbles of data matrix to one-hot
#[derive(Debug, Clone)] #[derive(Debug, Clone)]
pub struct OneHotEncoder<E> { pub struct OneHotEncoder {
series_encoders: Vec<E>, category_mappers: Vec<CategoryMapper<CategoricalFloat>>,
col_idx_categorical: Vec<usize>, col_idx_categorical: Vec<usize>,
} }
impl<E: SeriesEncoder<CategoricalFloat>> OneHotEncoder<E> { impl OneHotEncoder {
/// Create an encoder instance with categories infered from data matrix /// Create an encoder instance with categories infered from data matrix
pub fn fit<T: Categorizable, M: Matrix<T>>( pub fn fit<T, M>(data: &M, params: OneHotEncoderParams) -> Result<OneHotEncoder, Failed>
data: &M, where
params: OneHotEncoderParams, T: Categorizable,
) -> Result<OneHotEncoder<E>, Failed> { M: Matrix<T>,
{
match (params.col_idx_categorical, params.infer_categorical) { match (params.col_idx_categorical, params.infer_categorical) {
(None, false) => Err(Failed::fit( (None, false) => Err(Failed::fit(
"Must pass categorical series ids or infer flag", "Must pass categorical series ids or infer flag",
@@ -126,8 +127,7 @@ impl<E: SeriesEncoder<CategoricalFloat>> OneHotEncoder<E> {
// col buffer to avoid allocations // col buffer to avoid allocations
let mut col_buf: Vec<T> = iter::repeat(T::zero()).take(nrows).collect(); let mut col_buf: Vec<T> = iter::repeat(T::zero()).take(nrows).collect();
let mut res: Vec<E> = let mut res: Vec<CategoryMapper<CategoricalFloat>> = Vec::with_capacity(idxs.len());
Vec::with_capacity(idxs.len());
for &idx in &idxs { for &idx in &idxs {
data.copy_col_as_vec(idx, &mut col_buf); data.copy_col_as_vec(idx, &mut col_buf);
@@ -139,11 +139,11 @@ impl<E: SeriesEncoder<CategoricalFloat>> OneHotEncoder<E> {
return Err(Failed::fit(&msg[..])); return Err(Failed::fit(&msg[..]));
} }
let hashable_col = col_buf.iter().map(|v| v.to_category()); let hashable_col = col_buf.iter().map(|v| v.to_category());
res.push(E::fit_to_iter(hashable_col)); res.push(CategoryMapper::fit_to_iter(hashable_col));
} }
Ok(Self { Ok(Self {
series_encoders: res, //Self::build_series_encoders::<T, M>(data, &idxs[..]), category_mappers: res,
col_idx_categorical: idxs, col_idx_categorical: idxs,
}) })
} }
@@ -155,10 +155,14 @@ impl<E: SeriesEncoder<CategoricalFloat>> OneHotEncoder<E> {
} }
/// Transform categorical variables to one-hot encoded and return a new matrix /// Transform categorical variables to one-hot encoded and return a new matrix
pub fn transform<T: Categorizable, M: Matrix<T>>(&self, x: &M) -> Result<M, Failed> { pub fn transform<T, M>(&self, x: &M) -> Result<M, Failed>
where
T: Categorizable,
M: Matrix<T>,
{
let (nrows, p) = x.shape(); let (nrows, p) = x.shape();
let additional_params: Vec<usize> = self let additional_params: Vec<usize> = self
.series_encoders .category_mappers
.iter() .iter()
.map(|enc| enc.num_categories()) .map(|enc| enc.num_categories())
.collect(); .collect();
@@ -172,10 +176,10 @@ impl<E: SeriesEncoder<CategoricalFloat>> OneHotEncoder<E> {
for (pidx, &old_cidx) in self.col_idx_categorical.iter().enumerate() { for (pidx, &old_cidx) in self.col_idx_categorical.iter().enumerate() {
let cidx = new_col_idx[old_cidx]; let cidx = new_col_idx[old_cidx];
let col_iter = (0..nrows).map(|r| x.get(r, old_cidx).to_category()); let col_iter = (0..nrows).map(|r| x.get(r, old_cidx).to_category());
let sencoder = &self.series_encoders[pidx]; let sencoder = &self.category_mappers[pidx];
let oh_series: Vec<Option<Vec<T>>> = sencoder.transform_iter(col_iter); let oh_series = col_iter.map(|c| sencoder.get_one_hot::<T, Vec<T>>(&c));
for (row, oh_vec) in oh_series.iter().enumerate() { for (row, oh_vec) in oh_series.enumerate() {
match oh_vec { match oh_vec {
None => { None => {
// Since we support T types, bad value in a series causes in to be invalid // Since we support T types, bad value in a series causes in to be invalid
@@ -215,16 +219,11 @@ impl<E: SeriesEncoder<CategoricalFloat>> OneHotEncoder<E> {
} }
} }
/// Convinince type for common use
pub type OneHotEnc = OneHotEncoder<SeriesOneHotEncoder<CategoricalFloat>>;
#[cfg(test)] #[cfg(test)]
mod tests { mod tests {
use super::*; use super::*;
use crate::linalg::naive::dense_matrix::DenseMatrix; use crate::linalg::naive::dense_matrix::DenseMatrix;
use crate::preprocessing::series_encoder::SeriesOneHotEncoder; use crate::preprocessing::series_encoder::CategoryMapper;
#[test] #[test]
fn adjust_idxs() { fn adjust_idxs() {
@@ -275,8 +274,8 @@ mod tests {
let series = vec![3.0, 1.0, 2.0, 1.0]; let series = vec![3.0, 1.0, 2.0, 1.0];
let hashable_series: Vec<CategoricalFloat> = let hashable_series: Vec<CategoricalFloat> =
series.iter().map(|v| v.to_category()).collect(); series.iter().map(|v| v.to_category()).collect();
let enc = SeriesOneHotEncoder::from_positional_category_vec(hashable_series); let enc = CategoryMapper::from_positional_category_vec(hashable_series);
let inv = enc.invert_one(vec![0.0, 0.0, 1.0]); let inv = enc.invert_one_hot(vec![0.0, 0.0, 1.0]);
let orig_val: f64 = inv.unwrap().into(); let orig_val: f64 = inv.unwrap().into();
assert_eq!(orig_val, 2.0); assert_eq!(orig_val, 2.0);
} }
@@ -284,11 +283,11 @@ mod tests {
fn test_fit() { fn test_fit() {
let (x, _) = build_fake_matrix(); let (x, _) = build_fake_matrix();
let params = OneHotEncoderParams::from_cat_idx(&[1, 3]); let params = OneHotEncoderParams::from_cat_idx(&[1, 3]);
let oh_enc = OneHotEnc::fit(&x, params).unwrap(); let oh_enc = OneHotEncoder::fit(&x, params).unwrap();
assert_eq!(oh_enc.series_encoders.len(), 2); assert_eq!(oh_enc.category_mappers.len(), 2);
let num_cat: Vec<usize> = oh_enc let num_cat: Vec<usize> = oh_enc
.series_encoders .category_mappers
.iter() .iter()
.map(|a| a.num_categories()) .map(|a| a.num_categories())
.collect(); .collect();
@@ -299,13 +298,13 @@ mod tests {
fn matrix_transform_test() { fn matrix_transform_test() {
let (x, expected_x) = build_fake_matrix(); let (x, expected_x) = build_fake_matrix();
let params = OneHotEncoderParams::from_cat_idx(&[1, 3]); let params = OneHotEncoderParams::from_cat_idx(&[1, 3]);
let oh_enc = OneHotEnc::fit(&x, params).unwrap(); let oh_enc = OneHotEncoder::fit(&x, params).unwrap();
let nm = oh_enc.transform(&x).unwrap(); let nm = oh_enc.transform(&x).unwrap();
assert_eq!(nm, expected_x); assert_eq!(nm, expected_x);
let (x, expected_x) = build_cat_first_and_last(); let (x, expected_x) = build_cat_first_and_last();
let params = OneHotEncoderParams::from_cat_idx(&[0, 2]); let params = OneHotEncoderParams::from_cat_idx(&[0, 2]);
let oh_enc = OneHotEnc::fit(&x, params).unwrap(); let oh_enc = OneHotEncoder::fit(&x, params).unwrap();
let nm = oh_enc.transform(&x).unwrap(); let nm = oh_enc.transform(&x).unwrap();
assert_eq!(nm, expected_x); assert_eq!(nm, expected_x);
} }
@@ -320,7 +319,7 @@ mod tests {
]); ]);
let params = OneHotEncoderParams::from_cat_idx(&[1]); let params = OneHotEncoderParams::from_cat_idx(&[1]);
match OneHotEnc::fit(&m, params) { match OneHotEncoder::fit(&m, params) {
Err(_) => { Err(_) => {
assert!(true); assert!(true);
} }