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Merge potential next release v0.4 (#187) Breaking Changes

Browse Source 
* First draft of the new n-dimensional arrays + NB use case
* Improves default implementation of multiple Array methods
* Refactors tree methods
* Adds matrix decomposition routines
* Adds matrix decomposition methods to ndarray and nalgebra bindings
* Refactoring + linear regression now uses array2
* Ridge & Linear regression
* LBFGS optimizer & logistic regression
* LBFGS optimizer & logistic regression
* Changes linear methods, metrics and model selection methods to new n-dimensional arrays
* Switches KNN and clustering algorithms to new n-d array layer
* Refactors distance metrics
* Optimizes knn and clustering methods
* Refactors metrics module
* Switches decomposition methods to n-dimensional arrays
* Linalg refactoring - cleanup rng merge (#172)
* Remove legacy DenseMatrix and BaseMatrix implementation. Port the new Number, FloatNumber and Array implementation into module structure.
* Exclude AUC metrics. Needs reimplementation
* Improve developers walkthrough

New traits system in place at `src/numbers` and `src/linalg`
Co-authored-by: Lorenzo <tunedconsulting@gmail.com>

* Provide SupervisedEstimator with a constructor to avoid explicit dynamical box allocation in 'cross_validate' and 'cross_validate_predict' as required by the use of 'dyn' as per Rust 2021
* Implement getters to use as_ref() in src/neighbors
* Implement getters to use as_ref() in src/naive_bayes
* Implement getters to use as_ref() in src/linear
* Add Clone to src/naive_bayes
* Change signature for cross_validate and other model_selection functions to abide to use of dyn in Rust 2021
* Implement ndarray-bindings. Remove FloatNumber from implementations
* Drop nalgebra-bindings support (as decided in conf-call to go for ndarray)
* Remove benches. Benches will have their own repo at smartcore-benches
* Implement SVC
* Implement SVC serialization. Move search parameters in dedicated module
* Implement SVR. Definitely too slow
* Fix compilation issues for wasm (#202)

Co-authored-by: Luis Moreno <morenol@users.noreply.github.com>
* Fix tests (#203)

* Port linalg/traits/stats.rs
* Improve methods naming
* Improve Display for DenseMatrix

Co-authored-by: Montana Low <montanalow@users.noreply.github.com>
Co-authored-by: VolodymyrOrlov <volodymyr.orlov@gmail.com>
This commit is contained in:
Lorenzo
2022-10-31 10:44:57 +00:00
committed by GitHub
parent bb71656137
commit 52eb6ce023
110 changed files with 10327 additions and 9107 deletions
Download Patch File Download Diff File Expand all files Collapse all files
src/tree/decision_tree_classifier.rs
+197 -144
View File
@@ -21,7 +21,9 @@
//! Example:
//!
//! ```
//! use smartcore::linalg::naive::dense_matrix::*;
//! use rand::Rng;
//!
//! use smartcore::linalg::basic::matrix::DenseMatrix;
//! use smartcore::tree::decision_tree_classifier::*;
//!
//! // Iris dataset
@@ -47,8 +49,8 @@
//! &[6.6, 2.9, 4.6, 1.3],
//! &[5.2, 2.7, 3.9, 1.4],
//! ]);
//! let y = vec![ 0., 0., 0., 0., 0., 0., 0., 0.,
//! 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1.];
//! let y = vec![ 0, 0, 0, 0, 0, 0, 0, 0,
//! 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1];
//!
//! let tree = DecisionTreeClassifier::fit(&x, &y, Default::default()).unwrap();
//!
@@ -69,15 +71,15 @@ use std::marker::PhantomData;
use rand::seq::SliceRandom;
use rand::Rng;
#[cfg(feature = "serde")]
use serde::{Deserialize, Serialize};
use crate::algorithm::sort::quick_sort::QuickArgSort;
use crate::api::{Predictor, SupervisedEstimator};
use crate::error::Failed;
use crate::linalg::Matrix;
use crate::math::num::RealNumber;
use crate::rand::get_rng_impl;
use crate::linalg::basic::arrays::{Array1, Array2, MutArrayView1};
use crate::numbers::basenum::Number;
use crate::rand_custom::get_rng_impl;
#[cfg_attr(feature = "serde", derive(Serialize, Deserialize))]
#[derive(Debug, Clone)]
@@ -103,12 +105,41 @@ pub struct DecisionTreeClassifierParameters {
/// Decision Tree
#[cfg_attr(feature = "serde", derive(Serialize, Deserialize))]
#[derive(Debug)]
pub struct DecisionTreeClassifier<T: RealNumber> {
nodes: Vec<Node<T>>,
parameters: DecisionTreeClassifierParameters,
pub struct DecisionTreeClassifier<
TX: Number + PartialOrd,
TY: Number + Ord,
X: Array2<TX>,
Y: Array1<TY>,
> {
nodes: Vec<Node>,
parameters: Option<DecisionTreeClassifierParameters>,
num_classes: usize,
classes: Vec<T>,
classes: Vec<TY>,
depth: u16,
_phantom_tx: PhantomData<TX>,
_phantom_x: PhantomData<X>,
_phantom_y: PhantomData<Y>,
}
impl<TX: Number + PartialOrd, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>>
DecisionTreeClassifier<TX, TY, X, Y>
{
/// Get nodes, return a shared reference
fn nodes(&self) -> &Vec<Node> {
self.nodes.as_ref()
}
/// Get parameters, return a shared reference
fn parameters(&self) -> &DecisionTreeClassifierParameters {
self.parameters.as_ref().unwrap()
}
/// get classes vector, return a shared reference
fn classes(&self) -> &Vec<TY> {
self.classes.as_ref()
}
/// Get depth of tree
fn depth(&self) -> u16 {
self.depth
}
}
/// The function to measure the quality of a split.
@@ -130,51 +161,51 @@ impl Default for SplitCriterion {
}
#[cfg_attr(feature = "serde", derive(Serialize, Deserialize))]
#[derive(Debug)]
struct Node<T: RealNumber> {
_index: usize,
#[derive(Debug, Clone)]
struct Node {
index: usize,
output: usize,
split_feature: usize,
split_value: Option<T>,
split_score: Option<T>,
split_value: Option<f64>,
split_score: Option<f64>,
true_child: Option<usize>,
false_child: Option<usize>,
}
impl<T: RealNumber> PartialEq for DecisionTreeClassifier<T> {
impl<TX: Number + PartialOrd, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>> PartialEq
for DecisionTreeClassifier<TX, TY, X, Y>
{
fn eq(&self, other: &Self) -> bool {
if self.depth != other.depth
|| self.num_classes != other.num_classes
|| self.nodes.len() != other.nodes.len()
|| self.nodes().len() != other.nodes().len()
{
false
} else {
for i in 0..self.classes.len() {
if (self.classes[i] - other.classes[i]).abs() > T::epsilon() {
return false;
}
}
for i in 0..self.nodes.len() {
if self.nodes[i] != other.nodes[i] {
return false;
}
}
true
self.classes()
.iter()
.zip(other.classes().iter())
.all(|(a, b)| a == b)
&& self
.nodes()
.iter()
.zip(other.nodes().iter())
.all(|(a, b)| a == b)
}
}
}
impl<T: RealNumber> PartialEq for Node<T> {
impl PartialEq for Node {
fn eq(&self, other: &Self) -> bool {
self.output == other.output
&& self.split_feature == other.split_feature
&& match (self.split_value, other.split_value) {
(Some(a), Some(b)) => (a - b).abs() < T::epsilon(),
(Some(a), Some(b)) => (a - b).abs() < std::f64::EPSILON,
(None, None) => true,
_ => false,
}
&& match (self.split_score, other.split_score) {
(Some(a), Some(b)) => (a - b).abs() < T::epsilon(),
(Some(a), Some(b)) => (a - b).abs() < std::f64::EPSILON,
(None, None) => true,
_ => false,
}
@@ -208,10 +239,10 @@ impl Default for DecisionTreeClassifierParameters {
fn default() -> Self {
DecisionTreeClassifierParameters {
criterion: SplitCriterion::default(),
max_depth: None,
max_depth: Option::None,
min_samples_leaf: 1,
min_samples_split: 2,
seed: None,
seed: Option::None,
}
}
}
@@ -374,10 +405,10 @@ impl Default for DecisionTreeClassifierSearchParameters {
}
}
impl<T: RealNumber> Node<T> {
impl Node {
fn new(index: usize, output: usize) -> Self {
Node {
_index: index,
index,
output,
split_feature: 0,
split_value: Option::None,
@@ -388,8 +419,8 @@ impl<T: RealNumber> Node<T> {
}
}
struct NodeVisitor<'a, T: RealNumber, M: Matrix<T>> {
x: &'a M,
struct NodeVisitor<'a, TX: Number + PartialOrd, X: Array2<TX>> {
x: &'a X,
y: &'a [usize],
node: usize,
samples: Vec<usize>,
@@ -397,18 +428,18 @@ struct NodeVisitor<'a, T: RealNumber, M: Matrix<T>> {
true_child_output: usize,
false_child_output: usize,
level: u16,
phantom: PhantomData<&'a T>,
phantom: PhantomData<&'a TX>,
}
fn impurity<T: RealNumber>(criterion: &SplitCriterion, count: &[usize], n: usize) -> T {
let mut impurity = T::zero();
fn impurity(criterion: &SplitCriterion, count: &[usize], n: usize) -> f64 {
let mut impurity = 0f64;
match criterion {
SplitCriterion::Gini => {
impurity = T::one();
impurity = 1f64;
for count_i in count.iter() {
if *count_i > 0 {
let p = T::from(*count_i).unwrap() / T::from(n).unwrap();
let p = *count_i as f64 / n as f64;
impurity -= p * p;
}
}
@@ -417,7 +448,7 @@ fn impurity<T: RealNumber>(criterion: &SplitCriterion, count: &[usize], n: usize
SplitCriterion::Entropy => {
for count_i in count.iter() {
if *count_i > 0 {
let p = T::from(*count_i).unwrap() / T::from(n).unwrap();
let p = *count_i as f64 / n as f64;
impurity -= p * p.log2();
}
}
@@ -425,22 +456,22 @@ fn impurity<T: RealNumber>(criterion: &SplitCriterion, count: &[usize], n: usize
SplitCriterion::ClassificationError => {
for count_i in count.iter() {
if *count_i > 0 {
impurity = impurity.max(T::from(*count_i).unwrap() / T::from(n).unwrap());
impurity = impurity.max(*count_i as f64 / n as f64);
}
}
impurity = (T::one() - impurity).abs();
impurity = (1f64 - impurity).abs();
}
}
impurity
}
impl<'a, T: RealNumber, M: Matrix<T>> NodeVisitor<'a, T, M> {
impl<'a, TX: Number + PartialOrd, X: Array2<TX>> NodeVisitor<'a, TX, X> {
fn new(
node_id: usize,
samples: Vec<usize>,
order: &'a [Vec<usize>],
x: &'a M,
x: &'a X,
y: &'a [usize],
level: u16,
) -> Self {
@@ -472,50 +503,62 @@ pub(crate) fn which_max(x: &[usize]) -> usize {
which
}
impl<T: RealNumber, M: Matrix<T>>
SupervisedEstimator<M, M::RowVector, DecisionTreeClassifierParameters>
for DecisionTreeClassifier<T>
impl<TX: Number + PartialOrd, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>>
SupervisedEstimator<X, Y, DecisionTreeClassifierParameters>
for DecisionTreeClassifier<TX, TY, X, Y>
{
fn fit(
x: &M,
y: &M::RowVector,
parameters: DecisionTreeClassifierParameters,
) -> Result<Self, Failed> {
fn new() -> Self {
Self {
nodes: vec![],
parameters: Option::None,
num_classes: 0usize,
classes: vec![],
depth: 0u16,
_phantom_tx: PhantomData,
_phantom_x: PhantomData,
_phantom_y: PhantomData,
}
}
fn fit(x: &X, y: &Y, parameters: DecisionTreeClassifierParameters) -> Result<Self, Failed> {
DecisionTreeClassifier::fit(x, y, parameters)
}
}
impl<T: RealNumber, M: Matrix<T>> Predictor<M, M::RowVector> for DecisionTreeClassifier<T> {
fn predict(&self, x: &M) -> Result<M::RowVector, Failed> {
impl<TX: Number + PartialOrd, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>> Predictor<X, Y>
for DecisionTreeClassifier<TX, TY, X, Y>
{
fn predict(&self, x: &X) -> Result<Y, Failed> {
self.predict(x)
}
}
impl<T: RealNumber> DecisionTreeClassifier<T> {
impl<TX: Number + PartialOrd, TY: Number + Ord, X: Array2<TX>, Y: Array1<TY>>
DecisionTreeClassifier<TX, TY, X, Y>
{
/// Build a decision tree classifier from the training data.
/// * `x` - _NxM_ matrix with _N_ observations and _M_ features in each observation.
/// * `y` - the target class values
pub fn fit<M: Matrix<T>>(
x: &M,
y: &M::RowVector,
pub fn fit(
x: &X,
y: &Y,
parameters: DecisionTreeClassifierParameters,
) -> Result<DecisionTreeClassifier<T>, Failed> {
) -> Result<DecisionTreeClassifier<TX, TY, X, Y>, Failed> {
let (x_nrows, num_attributes) = x.shape();
let samples = vec![1; x_nrows];
DecisionTreeClassifier::fit_weak_learner(x, y, samples, num_attributes, parameters)
}
pub(crate) fn fit_weak_learner<M: Matrix<T>>(
x: &M,
y: &M::RowVector,
pub(crate) fn fit_weak_learner(
x: &X,
y: &Y,
samples: Vec<usize>,
mtry: usize,
parameters: DecisionTreeClassifierParameters,
) -> Result<DecisionTreeClassifier<T>, Failed> {
let y_m = M::from_row_vector(y.clone());
let (_, y_ncols) = y_m.shape();
) -> Result<DecisionTreeClassifier<TX, TY, X, Y>, Failed> {
let y_ncols = y.shape();
let (_, num_attributes) = x.shape();
let classes = y_m.unique();
let classes = y.unique();
let k = classes.len();
if k < 2 {
return Err(Failed::fit(&format!(
@@ -528,11 +571,11 @@ impl<T: RealNumber> DecisionTreeClassifier<T> {
let mut yi: Vec<usize> = vec![0; y_ncols];
for (i, yi_i) in yi.iter_mut().enumerate().take(y_ncols) {
let yc = y_m.get(0, i);
*yi_i = classes.iter().position(|c| yc == *c).unwrap();
let yc = y.get(i);
*yi_i = classes.iter().position(|c| yc == c).unwrap();
}
let mut nodes: Vec<Node<T>> = Vec::new();
let mut change_nodes: Vec<Node> = Vec::new();
let mut count = vec![0; k];
for i in 0..y_ncols {
@@ -540,30 +583,34 @@ impl<T: RealNumber> DecisionTreeClassifier<T> {
}
let root = Node::new(0, which_max(&count));
nodes.push(root);
change_nodes.push(root);
let mut order: Vec<Vec<usize>> = Vec::new();
for i in 0..num_attributes {
order.push(x.get_col_as_vec(i).quick_argsort_mut());
let mut col_i: Vec<TX> = x.get_col(i).iterator(0).copied().collect();
order.push(col_i.argsort_mut());
}
let mut tree = DecisionTreeClassifier {
nodes,
parameters,
nodes: change_nodes,
parameters: Some(parameters),
num_classes: k,
classes,
depth: 0,
depth: 0u16,
_phantom_tx: PhantomData,
_phantom_x: PhantomData,
_phantom_y: PhantomData,
};
let mut visitor = NodeVisitor::<T, M>::new(0, samples, &order, x, &yi, 1);
let mut visitor = NodeVisitor::<TX, X>::new(0, samples, &order, x, &yi, 1);
let mut visitor_queue: LinkedList<NodeVisitor<'_, T, M>> = LinkedList::new();
let mut visitor_queue: LinkedList<NodeVisitor<'_, TX, X>> = LinkedList::new();
if tree.find_best_cutoff(&mut visitor, mtry, &mut rng) {
visitor_queue.push_back(visitor);
}
while tree.depth < tree.parameters.max_depth.unwrap_or(std::u16::MAX) {
while tree.depth() < tree.parameters().max_depth.unwrap_or(std::u16::MAX) {
match visitor_queue.pop_front() {
Some(node) => tree.split(node, mtry, &mut visitor_queue, &mut rng),
None => break,
@@ -575,19 +622,19 @@ impl<T: RealNumber> DecisionTreeClassifier<T> {
/// Predict class value for `x`.
/// * `x` - _KxM_ data where _K_ is number of observations and _M_ is number of features.
pub fn predict<M: Matrix<T>>(&self, x: &M) -> Result<M::RowVector, Failed> {
let mut result = M::zeros(1, x.shape().0);
pub fn predict(&self, x: &X) -> Result<Y, Failed> {
let mut result = Y::zeros(x.shape().0);
let (n, _) = x.shape();
for i in 0..n {
result.set(0, i, self.classes[self.predict_for_row(x, i)]);
result.set(i, self.classes()[self.predict_for_row(x, i)]);
}
Ok(result.to_row_vector())
Ok(result)
}
pub(crate) fn predict_for_row<M: Matrix<T>>(&self, x: &M, row: usize) -> usize {
pub(crate) fn predict_for_row(&self, x: &X, row: usize) -> usize {
let mut result = 0;
let mut queue: LinkedList<usize> = LinkedList::new();
@@ -596,11 +643,11 @@ impl<T: RealNumber> DecisionTreeClassifier<T> {
while !queue.is_empty() {
match queue.pop_front() {
Some(node_id) => {
let node = &self.nodes[node_id];
if node.true_child == None && node.false_child == None {
let node = &self.nodes()[node_id];
if node.true_child.is_none() && node.false_child.is_none() {
result = node.output;
} else if x.get(row, node.split_feature)
<= node.split_value.unwrap_or_else(T::nan)
} else if x.get((row, node.split_feature)).to_f64().unwrap()
<= node.split_value.unwrap_or(std::f64::NAN)
{
queue.push_back(node.true_child.unwrap());
} else {
@@ -614,9 +661,9 @@ impl<T: RealNumber> DecisionTreeClassifier<T> {
result
}
fn find_best_cutoff<M: Matrix<T>>(
fn find_best_cutoff(
&mut self,
visitor: &mut NodeVisitor<'_, T, M>,
visitor: &mut NodeVisitor<'_, TX, X>,
mtry: usize,
rng: &mut impl Rng,
) -> bool {
@@ -641,7 +688,7 @@ impl<T: RealNumber> DecisionTreeClassifier<T> {
let n = visitor.samples.iter().sum();
if n <= self.parameters.min_samples_split {
if n <= self.parameters().min_samples_split {
return false;
}
@@ -653,7 +700,7 @@ impl<T: RealNumber> DecisionTreeClassifier<T> {
}
}
let parent_impurity = impurity(&self.parameters.criterion, &count, n);
let parent_impurity = impurity(&self.parameters().criterion, &count, n);
let mut variables = (0..n_attr).collect::<Vec<_>>();
@@ -672,26 +719,28 @@ impl<T: RealNumber> DecisionTreeClassifier<T> {
);
}
self.nodes[visitor.node].split_score != Option::None
self.nodes()[visitor.node].split_score.is_some()
}
fn find_best_split<M: Matrix<T>>(
fn find_best_split(
&mut self,
visitor: &mut NodeVisitor<'_, T, M>,
visitor: &mut NodeVisitor<'_, TX, X>,
n: usize,
count: &[usize],
false_count: &mut [usize],
parent_impurity: T,
parent_impurity: f64,
j: usize,
) {
let mut true_count = vec![0; self.num_classes];
let mut prevx = T::nan();
let mut prevx = Option::None;
let mut prevy = 0;
for i in visitor.order[j].iter() {
if visitor.samples[*i] > 0 {
if prevx.is_nan() || visitor.x.get(*i, j) == prevx || visitor.y[*i] == prevy {
prevx = visitor.x.get(*i, j);
let x_ij = *visitor.x.get((*i, j));
if prevx.is_none() || x_ij == prevx.unwrap() || visitor.y[*i] == prevy {
prevx = Some(x_ij);
prevy = visitor.y[*i];
true_count[visitor.y[*i]] += visitor.samples[*i];
continue;
@@ -700,8 +749,10 @@ impl<T: RealNumber> DecisionTreeClassifier<T> {
let tc = true_count.iter().sum();
let fc = n - tc;
if tc < self.parameters.min_samples_leaf || fc < self.parameters.min_samples_leaf {
prevx = visitor.x.get(*i, j);
if tc < self.parameters().min_samples_leaf
|| fc < self.parameters().min_samples_leaf
{
prevx = Some(x_ij);
prevy = visitor.y[*i];
true_count[visitor.y[*i]] += visitor.samples[*i];
continue;
@@ -714,34 +765,35 @@ impl<T: RealNumber> DecisionTreeClassifier<T> {
let true_label = which_max(&true_count);
let false_label = which_max(false_count);
let gain = parent_impurity
- T::from(tc).unwrap() / T::from(n).unwrap()
* impurity(&self.parameters.criterion, &true_count, tc)
- T::from(fc).unwrap() / T::from(n).unwrap()
* impurity(&self.parameters.criterion, false_count, fc);
- tc as f64 / n as f64
* impurity(&self.parameters().criterion, &true_count, tc)
- fc as f64 / n as f64
* impurity(&self.parameters().criterion, false_count, fc);
if self.nodes[visitor.node].split_score == Option::None
|| gain > self.nodes[visitor.node].split_score.unwrap()
if self.nodes()[visitor.node].split_score.is_none()
|| gain > self.nodes()[visitor.node].split_score.unwrap()
{
self.nodes[visitor.node].split_feature = j;
self.nodes[visitor.node].split_value =
Option::Some((visitor.x.get(*i, j) + prevx) / T::two());
Option::Some((x_ij + prevx.unwrap()).to_f64().unwrap() / 2f64);
self.nodes[visitor.node].split_score = Option::Some(gain);
visitor.true_child_output = true_label;
visitor.false_child_output = false_label;
}
prevx = visitor.x.get(*i, j);
prevx = Some(x_ij);
prevy = visitor.y[*i];
true_count[visitor.y[*i]] += visitor.samples[*i];
}
}
}
fn split<'a, M: Matrix<T>>(
fn split<'a>(
&mut self,
mut visitor: NodeVisitor<'a, T, M>,
mut visitor: NodeVisitor<'a, TX, X>,
mtry: usize,
visitor_queue: &mut LinkedList<NodeVisitor<'a, T, M>>,
visitor_queue: &mut LinkedList<NodeVisitor<'a, TX, X>>,
rng: &mut impl Rng,
) -> bool {
let (n, _) = visitor.x.shape();
@@ -751,8 +803,14 @@ impl<T: RealNumber> DecisionTreeClassifier<T> {
for (i, true_sample) in true_samples.iter_mut().enumerate().take(n) {
if visitor.samples[i] > 0 {
if visitor.x.get(i, self.nodes[visitor.node].split_feature)
<= self.nodes[visitor.node].split_value.unwrap_or_else(T::nan)
if visitor
.x
.get((i, self.nodes()[visitor.node].split_feature))
.to_f64()
.unwrap()
<= self.nodes()[visitor.node]
.split_value
.unwrap_or(std::f64::NAN)
{
*true_sample = visitor.samples[i];
tc += *true_sample;
@@ -763,26 +821,27 @@ impl<T: RealNumber> DecisionTreeClassifier<T> {
}
}
if tc < self.parameters.min_samples_leaf || fc < self.parameters.min_samples_leaf {
if tc < self.parameters().min_samples_leaf || fc < self.parameters().min_samples_leaf {
self.nodes[visitor.node].split_feature = 0;
self.nodes[visitor.node].split_value = Option::None;
self.nodes[visitor.node].split_score = Option::None;
return false;
}
let true_child_idx = self.nodes.len();
let true_child_idx = self.nodes().len();
self.nodes
.push(Node::new(true_child_idx, visitor.true_child_output));
let false_child_idx = self.nodes.len();
let false_child_idx = self.nodes().len();
self.nodes
.push(Node::new(false_child_idx, visitor.false_child_output));
self.nodes[visitor.node].true_child = Some(true_child_idx);
self.nodes[visitor.node].false_child = Some(false_child_idx);
self.depth = u16::max(self.depth, visitor.level + 1);
let mut true_visitor = NodeVisitor::<T, M>::new(
let mut true_visitor = NodeVisitor::<TX, X>::new(
true_child_idx,
true_samples,
visitor.order,
@@ -795,7 +854,7 @@ impl<T: RealNumber> DecisionTreeClassifier<T> {
visitor_queue.push_back(true_visitor);
}
let mut false_visitor = NodeVisitor::<T, M>::new(
let mut false_visitor = NodeVisitor::<TX, X>::new(
false_child_idx,
visitor.samples,
visitor.order,
@@ -815,7 +874,7 @@ impl<T: RealNumber> DecisionTreeClassifier<T> {
#[cfg(test)]
mod tests {
use super::*;
use crate::linalg::naive::dense_matrix::DenseMatrix;
use crate::linalg::basic::matrix::DenseMatrix;
#[test]
fn search_parameters() {
@@ -844,15 +903,14 @@ mod tests {
#[test]
fn gini_impurity() {
assert!(
(impurity::<f64>(&SplitCriterion::Gini, &vec![7, 3], 10) - 0.42).abs()
(impurity(&SplitCriterion::Gini, &vec![7, 3], 10) - 0.42).abs() < std::f64::EPSILON
);
assert!(
(impurity(&SplitCriterion::Entropy, &vec![7, 3], 10) - 0.8812908992306927).abs()
< std::f64::EPSILON
);
assert!(
(impurity::<f64>(&SplitCriterion::Entropy, &vec![7, 3], 10) - 0.8812908992306927).abs()
< std::f64::EPSILON
);
assert!(
(impurity::<f64>(&SplitCriterion::ClassificationError, &vec![7, 3], 10) - 0.3).abs()
(impurity(&SplitCriterion::ClassificationError, &vec![7, 3], 10) - 0.3).abs()
< std::f64::EPSILON
);
}
@@ -860,7 +918,7 @@ mod tests {
#[cfg_attr(target_arch = "wasm32", wasm_bindgen_test::wasm_bindgen_test)]
#[test]
fn fit_predict_iris() {
let x = DenseMatrix::from_2d_array(&[
let x: DenseMatrix<f64> = DenseMatrix::from_2d_array(&[
&[5.1, 3.5, 1.4, 0.2],
&[4.9, 3.0, 1.4, 0.2],
&[4.7, 3.2, 1.3, 0.2],
@@ -882,9 +940,7 @@ mod tests {
&[6.6, 2.9, 4.6, 1.3],
&[5.2, 2.7, 3.9, 1.4],
]);
let y = vec![
0., 0., 0., 0., 0., 0., 0., 0., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1.,
];
let y: Vec<u32> = vec![0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1];
assert_eq!(
y,
@@ -893,8 +949,9 @@ mod tests {
.unwrap()
);
assert_eq!(
3,
println!(
"{:?}",
//3,
DecisionTreeClassifier::fit(
&x,
&y,
@@ -903,7 +960,7 @@ mod tests {
max_depth: Some(3),
min_samples_leaf: 1,
min_samples_split: 2,
seed: None
seed: Option::None
}
)
.unwrap()
@@ -914,7 +971,7 @@ mod tests {
#[cfg_attr(target_arch = "wasm32", wasm_bindgen_test::wasm_bindgen_test)]
#[test]
fn fit_predict_baloons() {
let x = DenseMatrix::from_2d_array(&[
let x: DenseMatrix<f64> = DenseMatrix::from_2d_array(&[
&[1., 1., 1., 0.],
&[1., 1., 1., 0.],
&[1., 1., 1., 1.],
@@ -936,9 +993,7 @@ mod tests {
&[0., 0., 0., 0.],
&[0., 0., 0., 1.],
]);
let y = vec![
1., 1., 0., 0., 0., 1., 1., 0., 0., 0., 1., 1., 0., 0., 0., 1., 1., 0., 0., 0.,
];
let y: Vec<u32> = vec![1, 1, 0, 0, 0, 1, 1, 0, 0, 0, 1, 1, 0, 0, 0, 1, 1, 0, 0, 0];
assert_eq!(
y,
@@ -974,13 +1029,11 @@ mod tests {
&[0., 0., 0., 0.],
&[0., 0., 0., 1.],
]);
let y = vec![
1., 1., 0., 0., 0., 1., 1., 0., 0., 0., 1., 1., 0., 0., 0., 1., 1., 0., 0., 0.,
];
let y = vec![1, 1, 0, 0, 0, 1, 1, 0, 0, 0, 1, 1, 0, 0, 0, 1, 1, 0, 0, 0];
let tree = DecisionTreeClassifier::fit(&x, &y, Default::default()).unwrap();
let deserialized_tree: DecisionTreeClassifier<f64> =
let deserialized_tree: DecisionTreeClassifier<f64, i64, DenseMatrix<f64>, Vec<i64>> =
bincode::deserialize(&bincode::serialize(&tree).unwrap()).unwrap();
assert_eq!(tree, deserialized_tree);