Merge potential next release v0.4 (#187) Breaking Changes

* First draft of the new n-dimensional arrays + NB use case
* Improves default implementation of multiple Array methods
* Refactors tree methods
* Adds matrix decomposition routines
* Adds matrix decomposition methods to ndarray and nalgebra bindings
* Refactoring + linear regression now uses array2
* Ridge & Linear regression
* LBFGS optimizer & logistic regression
* LBFGS optimizer & logistic regression
* Changes linear methods, metrics and model selection methods to new n-dimensional arrays
* Switches KNN and clustering algorithms to new n-d array layer
* Refactors distance metrics
* Optimizes knn and clustering methods
* Refactors metrics module
* Switches decomposition methods to n-dimensional arrays
* Linalg refactoring - cleanup rng merge (#172)
* Remove legacy DenseMatrix and BaseMatrix implementation. Port the new Number, FloatNumber and Array implementation into module structure.
* Exclude AUC metrics. Needs reimplementation
* Improve developers walkthrough

New traits system in place at `src/numbers` and `src/linalg`
Co-authored-by: Lorenzo <tunedconsulting@gmail.com>

* Provide SupervisedEstimator with a constructor to avoid explicit dynamical box allocation in 'cross_validate' and 'cross_validate_predict' as required by the use of 'dyn' as per Rust 2021
* Implement getters to use as_ref() in src/neighbors
* Implement getters to use as_ref() in src/naive_bayes
* Implement getters to use as_ref() in src/linear
* Add Clone to src/naive_bayes
* Change signature for cross_validate and other model_selection functions to abide to use of dyn in Rust 2021
* Implement ndarray-bindings. Remove FloatNumber from implementations
* Drop nalgebra-bindings support (as decided in conf-call to go for ndarray)
* Remove benches. Benches will have their own repo at smartcore-benches
* Implement SVC
* Implement SVC serialization. Move search parameters in dedicated module
* Implement SVR. Definitely too slow
* Fix compilation issues for wasm (#202)

Co-authored-by: Luis Moreno <morenol@users.noreply.github.com>
* Fix tests (#203)

* Port linalg/traits/stats.rs
* Improve methods naming
* Improve Display for DenseMatrix

Co-authored-by: Montana Low <montanalow@users.noreply.github.com>
Co-authored-by: VolodymyrOrlov <volodymyr.orlov@gmail.com>
This commit is contained in:
Lorenzo
2022-10-31 10:44:57 +00:00
committed by GitHub
parent bb71656137
commit 52eb6ce023
110 changed files with 10327 additions and 9107 deletions
+12 -11
View File
@@ -33,8 +33,8 @@
use crate::algorithm::neighbour::cover_tree::CoverTree;
use crate::algorithm::neighbour::linear_search::LinearKNNSearch;
use crate::error::Failed;
use crate::math::distance::Distance;
use crate::math::num::RealNumber;
use crate::metrics::distance::Distance;
use crate::numbers::basenum::Number;
#[cfg(feature = "serde")]
use serde::{Deserialize, Serialize};
@@ -44,7 +44,7 @@ pub mod cover_tree;
/// dissimilarities for vector-vector distance. Linkage algorithms used in fastpair
pub mod distances;
/// fastpair closest neighbour algorithm
pub mod fastpair;
// pub mod fastpair;
/// very simple algorithm that sequentially checks each element of the list until a match is found or the whole list has been searched.
pub mod linear_search;
@@ -67,13 +67,14 @@ impl Default for KNNAlgorithmName {
#[cfg_attr(feature = "serde", derive(Serialize, Deserialize))]
#[derive(Debug)]
pub(crate) enum KNNAlgorithm<T: RealNumber, D: Distance<Vec<T>, T>> {
LinearSearch(LinearKNNSearch<Vec<T>, T, D>),
CoverTree(CoverTree<Vec<T>, T, D>),
pub(crate) enum KNNAlgorithm<T: Number, D: Distance<Vec<T>>> {
LinearSearch(LinearKNNSearch<Vec<T>, D>),
CoverTree(CoverTree<Vec<T>, D>),
}
// TODO: missing documentation
impl KNNAlgorithmName {
pub(crate) fn fit<T: RealNumber, D: Distance<Vec<T>, T>>(
pub(crate) fn fit<T: Number, D: Distance<Vec<T>>>(
&self,
data: Vec<Vec<T>>,
distance: D,
@@ -89,8 +90,8 @@ impl KNNAlgorithmName {
}
}
impl<T: RealNumber, D: Distance<Vec<T>, T>> KNNAlgorithm<T, D> {
pub fn find(&self, from: &Vec<T>, k: usize) -> Result<Vec<(usize, T, &Vec<T>)>, Failed> {
impl<T: Number, D: Distance<Vec<T>>> KNNAlgorithm<T, D> {
pub fn find(&self, from: &Vec<T>, k: usize) -> Result<Vec<(usize, f64, &Vec<T>)>, Failed> {
match *self {
KNNAlgorithm::LinearSearch(ref linear) => linear.find(from, k),
KNNAlgorithm::CoverTree(ref cover) => cover.find(from, k),
@@ -100,8 +101,8 @@ impl<T: RealNumber, D: Distance<Vec<T>, T>> KNNAlgorithm<T, D> {
pub fn find_radius(
&self,
from: &Vec<T>,
radius: T,
) -> Result<Vec<(usize, T, &Vec<T>)>, Failed> {
radius: f64,
) -> Result<Vec<(usize, f64, &Vec<T>)>, Failed> {
match *self {
KNNAlgorithm::LinearSearch(ref linear) => linear.find_radius(from, radius),
KNNAlgorithm::CoverTree(ref cover) => cover.find_radius(from, radius),